RAxML-NG ascertainment bias correction model

[Antony Vincent]

Hi,

Is there an ascertainment bias correction model implemented in RAxML-NG?

Thank you!

[Alexey Kozlov]

Hi Antony,

> Is there an ascertainment bias correction model implemented in RAxML-NG?

not yet, but I plan to include it into the next beta release, which will become available very soon.

Best,
Alexey

[Antony Vincent]

Ok, I will wait for it.

Sincerely,

Antony

[Alexey Kozlov]

Hi Antony,

ascertainment bias correction is now available in RAXML-NG v0.4.0:

https://github.com/amkozlov/raxml-ng/releases/tag/0.4.0

You can use same models as in old good RAxML, namely:

Lewis: e.g. --model GTR+G+ASC_LEWIS

Felsenstein: e.g. --model GTR+G+ASC_FELS{1000} // 1000 invariant sites

Stamatakis: e.g. --model GTR+G+ASC_STAM{1000/2000/3000/4000} // 1000 invariant As, 2000 Cs, 3000 Gs, 4000 Ts

Please let me know if there will be any problems/questions.

Best,
Alexey

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[Antony Vincent]

Thank, I will try the new version today!