Little bug
15 views
Skip to first unread message
Emanuel Schmid
Jul 13, 2016, 3:03:29 AM7/13/16
to raxml
Hello
I think I discovered today a tiny bug which is annoying but not troublesome.
When re-rooting a tree with RAxML, the new tree is missing a proper end of line, which makes it unreadable by some down-stream programs (e.g. ggtree).
I used it the following way:
raxmlHPC-PTHREADS -m GTRGAMMA -p 12345 -s CDSmafft.fasta -n CDSmafft -T 10 -f a -# 100 -x 29062016
raxmlHPC-PTHREADS -m GTRGAMMA -p 12345 -t RAxML_bipartitions.CDSmafft -n RAxML_bipartitions.CDSmafft.Rooted -T10 -f I
RAxML version 8.1.2
I think I discovered today a tiny bug which is annoying but not troublesome.
When re-rooting a tree with RAxML, the new tree is missing a proper end of line, which makes it unreadable by some down-stream programs (e.g. ggtree).
I used it the following way:
raxmlHPC-PTHREADS -m GTRGAMMA -p 12345 -s CDSmafft.fasta -n CDSmafft -T 10 -f a -# 100 -x 29062016
raxmlHPC-PTHREADS -m GTRGAMMA -p 12345 -t RAxML_bipartitions.CDSmafft -n RAxML_bipartitions.CDSmafft.Rooted -T10 -f I
RAxML version 8.1.2
Alexandros Stamatakis
Jul 14, 2016, 2:44:26 AM7/14/16
to ra...@googlegroups.com
fixed:
https://github.com/stamatak/standard-RAxML/commit/2a8fbd90d2326abefeddc83b8823641156c8cff4
you can download via github, note that I have not tagged this very small
fix by a new version number,
alexis
> --
> You received this message because you are subscribed to the Google
> Groups "raxml" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to raxml+un...@googlegroups.com
> <mailto:raxml+un...@googlegroups.com>.
> For more options, visit https://groups.google.com/d/optout.
--
Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
of Arizona at Tucson
www.exelixis-lab.org
https://github.com/stamatak/standard-RAxML/commit/2a8fbd90d2326abefeddc83b8823641156c8cff4
you can download via github, note that I have not tagged this very small
fix by a new version number,
alexis
> You received this message because you are subscribed to the Google
> Groups "raxml" group.
> To unsubscribe from this group and stop receiving emails from it, send
> an email to raxml+un...@googlegroups.com
> <mailto:raxml+un...@googlegroups.com>.
> For more options, visit https://groups.google.com/d/optout.
--
Alexandros (Alexis) Stamatakis
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology
Adjunct Professor, Dept. of Ecology and Evolutionary Biology, University
of Arizona at Tucson
www.exelixis-lab.org
Reply all
Reply to author
Forward
0 new messages