Error in merge_otu_tables.py: No filepaths match pattern/name

43 views

Skip to first unread message

Justin

unread,

Oct 19, 2016, 11:52:21 PM10/19/16

to Qiime 1 Forum

merge_otu_tables.py -i File1.biom,File2,File3.biom,File4,File5.biom -o L6_test.biom

Error in merge_otu_tables.py: No filepaths match pattern/name 'otu_table_k__Bacteria_p__Bacteroidetes_c__Bacteroidia_o__Bacteroidales_f__[Paraprevotellaceae]g_[Prevotella].biom'. All patterns must be matched at least once.

Thanks,

File1.biom

File2.biom

File3.biom

File4.biom

File5.biom

Jamie Morton

unread,

Oct 20, 2016, 12:27:58 AM10/20/16

to Qiime 1 Forum

Hmm. Not sure what is going on here. I ran that command with the exact files that you attached.

Can you run

print_qiime_config.py -t

Reply all

Reply to author

Forward

0 new messages