Re-plotting with PhyloToAST

[tcar...@uncc.edu]

All,

Am attempting to use the PCoA.py a part of PhyloToAST to re-plot a QIIME output. While doing so, I run into two errors: 

Traceback (most recent call last):

  File "./PCoA.py", line 217, in <module>

    sys.exit(main())

  File "./PCoA.py", line 137, in main

    pc1v = parsed_unifrac["varexp"][pco[0] - 1]

TypeError: 'NoneType' object has no attribute '__getitem__'

OR

Traceback (most recent call last):

  File "./PCoA.py", line 217, in <module>

    sys.exit(main())

  File "./PCoA.py", line 127, in main

    colors = util.color_mapping(imap, map_header,

AttributeError: 'module' object has no attribute 'color_mapping'

Would anyone be so kind in providing advice for de-bunking these errors?

Regards,

Tyler

--

Tyler J. Carrier 

  Ph.D. Candidate, Reitzel Laboratory

  Department of Biological Sciences

  University of North Carolina at Charlotte

  Charlotte, NC 28223

[Colin Brislawn]

Hello Tyler,

This is forum is for Qiime 1 itself, and that script is part of PhyloToAST. You might have more luck opening an issue on the PhyloToAST GitHub page.

https://github.com/smdabdoub/phylotoast 

Hopefully the people to made that script can help you fix this error.

Colin