Python version: 2.7.3 (default, Jan 31 2014, 15:02:06) [GCC 4.6.3]
Python executable: /home/lauren/qiime_software/python-2.7.3-release/bin/python
matplotlib version: 1.3.1
biom-format version: 1.3.1
QIIME library version: 1.8.0
QIIME script version: 1.8.0
PyNAST version (if installed): 1.2.2
RDP Classifier version (if installed): rdp_classifier-2.2.jar
Java version (if installed): 1.7.0_91
blastmat_dir: /home/lauren/qiime_software/blast-2.2.22-release/data
topiaryexplorer_project_dir: None
pynast_template_alignment_fp: /home/lauren/qiime_software/core_set_aligned.fasta.imputed
cluster_jobs_fp: /home/lauren/qiime_software/qiime-1.8.0-release/bin/start_parallel_jobs.py
pynast_template_alignment_blastdb: None
assign_taxonomy_reference_seqs_fp: /home/lauren/qiime_software/gg_otus-13_8-release/rep_set/97_otus.fasta
template_alignment_lanemask_fp: /home/lauren/qiime_software/lanemask_in_1s_and_0s
qiime_scripts_dir: /home/lauren/qiime_software/qiime-1.8.0-release/bin
denoiser_min_per_core: 50
python_exe_fp: /home/lauren/qiime_software/python-2.7.3-release/bin/python
blastall_fp: /home/lauren/qiime_software/blast-2.2.22-release/bin/blastall
assign_taxonomy_id_to_taxonomy_fp: /home/lauren/qiime_software/gg_otus-13_8-release/taxonomy/97_otu_taxonomy.txt
FF...F...................F.F.....F.
======================================================================
FAIL: test_FastTree_supported_version (__main__.QIIMEDependencyFull)
FastTree is in path and version is supported
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/lauren/qiime_software/qiime-1.8.0-release/bin/print_qiime_config.py", line 365, in test_FastTree_supported_version
% ('.'.join(map(str,acceptable_version)), version_string))
AssertionError: Unsupported FastTree version. 2.1.3 is required, but running 2.1.7.
======================================================================
FAIL: test_INFERNAL_supported_version (__main__.QIIMEDependencyFull)
INFERNAL is in path and version is supported
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/lauren/qiime_software/qiime-1.8.0-release/bin/print_qiime_config.py", line 520, in test_INFERNAL_supported_version
% ('.'.join(map(str,acceptable_version)), version_string))
AssertionError: Unsupported INFERNAL version. 1.0.2 is required, but running # INFERNAL 1.1rc4 (June 2013)
======================================================================
FAIL: test_blast_supported_version (__main__.QIIMEDependencyFull)
blast is in path and version is supported
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/lauren/qiime_software/qiime-1.8.0-release/bin/print_qiime_config.py", line 477, in test_blast_supported_version
% ('.'.join(map(str,acceptable_version)), version_string))
AssertionError: Unsupported blast version. 2.2.22 is required, but running 2.2.26.
======================================================================
FAIL: test_python_supported_version (__main__.QIIMEDependencyFull)
python is in path and version is supported
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/lauren/qiime_software/qiime-1.8.0-release/bin/print_qiime_config.py", line 283, in test_python_supported_version
% ('.'.join(map(str,acceptable_version)), version_string))
AssertionError: Unsupported python version. 2.7.3 is required, but running 2.7.6.
======================================================================
FAIL: test_raxmlHPC_supported_version (__main__.QIIMEDependencyFull)
raxmlHPC is in path and version is supported
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/lauren/qiime_software/qiime-1.8.0-release/bin/print_qiime_config.py", line 600, in test_raxmlHPC_supported_version
% ('.'.join(map(str,acceptable_version)), version_string))
AssertionError: Unsupported raxmlHPC version. (7, 3, 0).(7, 3, 0) is required, but running 7.7.2.
======================================================================
FAIL: test_usearch_supported_version (__main__.QIIMEDependencyFull)
usearch is in path and version is supported
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/lauren/qiime_software/qiime-1.8.0-release/bin/print_qiime_config.py", line 715, in test_usearch_supported_version
% ('.'.join(map(str,acceptable_version)), version_string))
AssertionError: Unsupported usearch version. (5, 2, 236).(5, 2, 236) is required, but running
USEARCH is not freely redistributable and is thus not included in the
You may obtain a personal copy of the 32-bit program at no charge.
To use this feature, please go to:
Download USEARCH v5.2.236, then:
sudo mv usearch* /usr/local/bin/usearch
sudo chmod a+x /usr/local/bin/usearch
You probably also want to install USEARCH 6.1 as /usr/local/bin/usearch61