Carlos Lijeron
INSTALLING QIIME USING PIP
[root@compute011 ~]# pip install qiime
Collecting numpy>=1.9.0 (from qiime)
Using cached numpy-1.11.1.zip
Collecting scipy>=0.14.0 (from qiime)
Using cached scipy-0.18.0.tar.gz
Collecting cogent==1.5.3 (from qiime)
Using cached cogent-1.5.3.tgz
Collecting natsort<4.0.0 (from qiime)
Using cached natsort-3.5.6-py2.py3-none-any.whl
Collecting matplotlib!=1.4.2,>=1.1.0 (from qiime)
Using cached matplotlib-1.5.1.tar.gz
Complete output from command python setup.py egg_info:
============================================================================
Edit setup.cfg to change the build options
BUILDING MATPLOTLIB
matplotlib: yes [1.5.1]
python: yes [2.6.6 (r266:84292, Jan 22 2014, 09:42:36) [GCC
4.4.7 20120313 (Red Hat 4.4.7-4)]]
platform: yes [linux2]
REQUIRED DEPENDENCIES AND EXTENSIONS
numpy: yes [version 1.7.1]
dateutil: yes [using dateutil version 1.4.1]
pytz: yes [using pytz version 2010h]
cycler: yes [cycler was not found. pip will attempt to
install it after matplotlib.]
tornado: yes [tornado was not found. It is required for the
WebAgg backend. pip/easy_install may attempt to
install it after matplotlib.]
pyparsing: yes [pyparsing was not found. It is required for
mathtext support. pip/easy_install may attempt to
install it after matplotlib.]
libagg: yes [pkg-config information for 'libagg' could not
be found. Using local copy.]
freetype: no [The C/C++ header for freetype2 (ft2build.h)
could not be found. You may need to install the
development package.]
png: no [pkg-config information for 'libpng' could not
be found.]
qhull: yes [pkg-config information for 'qhull' could not be
found. Using local copy.]
OPTIONAL SUBPACKAGES
sample_data: yes [installing]
toolkits: yes [installing]
tests: yes [nose 0.11.1 or later is required to run the
matplotlib test suite. Please install it with pip or
your preferred tool to run the test suite / mock is
required to run the matplotlib test suite. Please
install it with pip or your preferred tool to run
the test suite]
toolkits_tests: yes [nose 0.11.1 or later is required to run the
matplotlib test suite. Please install it with pip or
your preferred tool to run the test suite / mock is
required to run the matplotlib test suite. Please
install it with pip or your preferred tool to run
the test suite]
OPTIONAL BACKEND EXTENSIONS
macosx: no [Mac OS-X only]
qt5agg: no [PyQt5 not found]
qt4agg: no [PySide not found; PyQt4 not found]
gtk3agg: no [Requires pygobject to be installed.]
gtk3cairo: no [Requires pygobject to be installed.]
gtkagg: no [Requires pygtk]
tkagg: no [TKAgg requires Tkinter.]
wxagg: no [requires wxPython]
gtk: no [Requires pygtk]
agg: yes [installing]
cairo: yes [installing, pycairo version 1.8.6]
windowing: no [Microsoft Windows only]
OPTIONAL LATEX DEPENDENCIES
dvipng: no
ghostscript: yes [version 8.70]
latex: no
pdftops: no
OPTIONAL PACKAGE DATA
dlls: no [skipping due to configuration]
============================================================================
* The following required packages can not be built:
* freetype, png
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-MqgKd6/matplotlib/
[root@compute011 ~]# pip install MatPlotLib==1.3.1
Same error as above.
I can't seem to get this installed at all. First I wanted to install in a shared location, but this gave me too many errors. Then I decided to deploy in every node of our cluster, but I keep getting stuck at the MatPlotLib.
Any help will be greatly appreciated.
Carlos.
