I echo your sentiments. I use the Atom and it's linter to edit my Polymer HTML templates and I don't know if it will work with html template literals.
I am using Polymer in a Java web application with no Javascript build framework. I simply update my Polymer components and refresh the page to immediately see the updates which is extremely productive for me. Adding in a preprocessor to convert HTML files into Javascript literals is unacceptable to me.
I hope Google keeps the html import functionality in both Polymer and Chrome until an official web standard can be worked out. I am using Polymer for an internal application and making it Chrome only is fine with me.
It boggles my mind that after 26 years of the web and a decade after AJAX there is still no standard way of dynamically loading HTML files and JavaScript innerHTML is the only solution.