Exception when execute Add Edge

Hoàng Hưng

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Aug 28, 2012, 11:02:09 PM8/28/12

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I have more than 1 million Account and 2 million Shares, Execute add Share to account, sometime I've got these below. How can i avoid it:

com.orientechnologies.orient.core.exception.ODatabaseException: Record position #4350448280 was bound to file #8 but the position #155909800 is out of file size

at com.orientechnologies.orient.core.storage.impl.local.OMultiFileSegment.getRelativePosition(OMultiFileSegment.java:256)

at com.orientechnologies.orient.core.storage.impl.local.ODataLocal.getFreeSpace(ODataLocal.java:604)

at com.orientechnologies.orient.core.storage.impl.local.ODataLocal.addRecord(ODataLocal.java:198)

at com.orientechnologies.orient.core.storage.impl.local.OStorageLocal.updateRecord(OStorageLocal.java:1598)

at com.orientechnologies.orient.core.storage.impl.local.OStorageLocal.updateRecord(OStorageLocal.java:939)

at com.orientechnologies.orient.core.db.raw.ODatabaseRaw.save(ODatabaseRaw.java:252)

at com.orientechnologies.orient.core.db.record.ODatabaseRecordAbstract.executeSaveRecord(ODatabaseRecordAbstract.java:668)

at com.orientechnologies.orient.core.tx.OTransactionNoTx.saveRecord(OTransactionNoTx.java:72)

at com.orientechnologies.orient.core.db.record.ODatabaseRecordTx.save(ODatabaseRecordTx.java:224)

at com.orientechnologies.orient.core.db.record.ODatabaseRecordTx.save(ODatabaseRecordTx.java:217)

at com.orientechnologies.orient.core.db.record.ODatabaseRecordTx.save(ODatabaseRecordTx.java:35)

at com.orientechnologies.orient.core.record.ORecordAbstract.save(ORecordAbstract.java:275)

at com.orientechnologies.orient.core.record.impl.ODocument.save(ODocument.java:1251)

at com.orientechnologies.orient.core.record.impl.ODocument.save(ODocument.java:1240)

at com.orientechnologies.orient.core.record.impl.ODocument.save(ODocument.java:69)

at com.orientechnologies.orient.core.type.tree.OMVRBTreeRID.saveAllNewEntries(OMVRBTreeRID.java:364)

at com.orientechnologies.orient.core.type.tree.provider.OMVRBTreeRIDProvider.toStream(OMVRBTreeRIDProvider.java:112)

at com.orientechnologies.orient.core.type.tree.OMVRBTreeRIDSet.toStream(OMVRBTreeRIDSet.java:170)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerCSVAbstract.linkSetToStream(ORecordSerializerCSVAbstract.java:404)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerCSVAbstract.fieldToStream(ORecordSerializerCSVAbstract.java:321)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerSchemaAware2CSV.toString(ORecordSerializerSchemaAware2CSV.java:278)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerStringAbstract.toStream(ORecordSerializerStringAbstract.java:87)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerSchemaAware2CSV.toStream(ORecordSerializerSchemaAware2CSV.java:475)

at com.orientechnologies.orient.core.record.ORecordSchemaAwareAbstract.toStream(ORecordSchemaAwareAbstract.java:118)

at com.orientechnologies.orient.core.record.ORecordSchemaAwareAbstract.toStream(ORecordSchemaAwareAbstract.java:113)

at com.orientechnologies.orient.core.record.impl.ODocument.toStream(ODocument.java:378)

at com.orientechnologies.orient.core.db.record.ODatabaseRecordAbstract.executeSaveRecord(ODatabaseRecordAbstract.java:621)

at com.orientechnologies.orient.core.tx.OTransactionNoTx.saveRecord(OTransactionNoTx.java:72)

at com.orientechnologies.orient.core.db.record.ODatabaseRecordTx.save(ODatabaseRecordTx.java:224)

at com.orientechnologies.orient.core.db.record.ODatabaseRecordTx.save(ODatabaseRecordTx.java:217)

at com.orientechnologies.orient.core.db.record.ODatabaseRecordTx.save(ODatabaseRecordTx.java:35)

at com.orientechnologies.orient.core.record.ORecordAbstract.save(ORecordAbstract.java:275)

at com.orientechnologies.orient.core.record.impl.ODocument.save(ODocument.java:1251)

at com.orientechnologies.orient.core.record.impl.ODocument.save(ODocument.java:1240)

at MyOrientDBTest.queryAddFriendNetworkDomain(MyOrientDBTest.java:666)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)

at java.lang.reflect.Method.invoke(Unknown Source)

at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44)

at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15)

at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41)

at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20)

at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28)

at org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:31)

at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79)

at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71)

at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49)

at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193)

at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52)

at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191)

at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42)

at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184)

at org.junit.runners.ParentRunner.run(ParentRunner.java:236)

at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50)

at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38)

at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467)

at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683)

at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390)

at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197)

Hoàng Hưng

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Aug 28, 2012, 11:04:50 PM8/28/12

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I use OrientDB 1.1.0 on Win 7 (64-bit)

Luca Garulli

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Aug 29, 2012, 9:57:59 AM8/29/12

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Hi,

seems that some RID points out of current db. Have you deleted some record without update the links? If you're using the Graph API it's managed automatically, otherwise it's on charge to the developer to clean all the references to the record on delete.

Lvc@

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Hoàng Hưng

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Aug 30, 2012, 12:00:28 AM8/30/12

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No, I did not delete manually.

I used:

databaseGrh.removeEdge(document);

Sometime i met java.lang.OutOfMemoryError: GC overhead limit exceeded when run update/add/delete edge. Did it cause problem with link?

"otherwise it's on charge to the developer to clean all the references to the record on delete. "

From now, i can't select on Account Vertex because it fires exception:

Error: com.orientechnologies.orient.core.exception.ODatabaseException: Error on retrieving record #26:95360 (cluster: accountvertex)

Error: com.orientechnologies.orient.core.exception.OStorageException: Error on reading record from file 'default.8.oda', position 4346487421, size 496.00Mb: the record size is bigger then the file itself (4.05Gb). Probably the record is dirty due to a previous crash. It is strongly suggested to restore the database or export and reimport this one.

I tried 2 times with export command but:

export database D:/temp/demo_graph.export.gz

Throws:

java.lang.ArrayIndexOutOfBoundsException: 1028182

at com.orientechnologies.orient.core.serialization.OBinaryProtocol.bytes2string(OBinaryProtocol.java:202)

at com.orientechnologies.orient.core.serialization.OBinaryProtocol.bytes2string(OBinaryProtocol.java:159)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerStringAbstract.fromStream(ORecordSerializerStringAbstract.java:76)

at com.orientechnologies.orient.core.record.ORecordSchemaAwareAbstract.deserializeFields(ORecordSchemaAwareAbstract.java:140)

at com.orientechnologies.orient.core.record.impl.ODocument.deserializeFields(ODocument.java:1261)

at com.orientechnologies.orient.core.record.impl.ODocument.checkForFields(ODocument.java:1201)

at com.orientechnologies.orient.core.record.ORecordSchemaAwareAbstract.getClassName(ORecordSchemaAwareAbstract.java:83)

at com.orientechnologies.orient.core.fetch.json.OJSONFetchContext.writeSignature(OJSONFetchContext.java:225)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerJSON.toString(ORecordSerializerJSON.java:488)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerStringAbstract.toString(ORecordSerializerStringAbstract.java:65)

at com.orientechnologies.orient.core.record.ORecordAbstract.toJSON(ORecordAbstract.java:187)

at com.orientechnologies.orient.core.db.tool.ODatabaseExport.exportRecord(ODatabaseExport.java:473)

at com.orientechnologies.orient.core.db.tool.ODatabaseExport.exportRecords(ODatabaseExport.java:185)

at com.orientechnologies.orient.core.db.tool.ODatabaseExport$1.call(ODatabaseExport.java:110)

at com.orientechnologies.orient.core.storage.OStorageAbstract.callInLock(OStorageAbstract.java:162)

at com.orientechnologies.orient.core.db.ODatabaseWrapperAbstract.callInLock(ODatabaseWrapperAbstract.java:310)

at com.orientechnologies.orient.core.db.tool.ODatabaseExport.exportDatabase(ODatabaseExport.java:93)

at com.orientechnologies.orient.console.OConsoleDatabaseApp.exportDatabase(OConsoleDatabaseApp.java:1389)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

at java.lang.reflect.Method.invoke(Method.java:597)

at com.orientechnologies.common.console.OConsoleApplication.execute(OConsoleApplication.java:238)

at com.orientechnologies.common.console.OConsoleApplication.executeCommands(OConsoleApplication.java:127)

at com.orientechnologies.common.console.OConsoleApplication.run(OConsoleApplication.java:92)

at com.orientechnologies.orient.graph.console.OGremlinConsole.main(OGremlinConsole.java:51)

com.orientechnologies.orient.core.exception.OSerializationException: Found invalid ) character. Ensure it is opened and closed correctly.

at com.orientechnologies.orient.core.serialization.serializer.OStringSerializerHelper.parse(OStringSerializerHelper.java:215)

at com.orientechnologies.orient.core.serialization.serializer.OStringSerializerHelper.smartSplit(OStringSerializerHelper.java:161)

at com.orientechnologies.orient.core.serialization.serializer.OStringSerializerHelper.smartSplit(OStringSerializerHelper.java:153)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerSchemaAware2CSV.fromString(ORecordSerializerSchemaAware2CSV.java:364)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerStringAbstract.fromStream(ORecordSerializerStringAbstract.java:76)

at com.orientechnologies.orient.core.record.ORecordSchemaAwareAbstract.deserializeFields(ORecordSchemaAwareAbstract.java:140)

at com.orientechnologies.orient.core.record.impl.ODocument.deserializeFields(ODocument.java:1261)

at com.orientechnologies.orient.core.record.impl.ODocument.checkForFields(ODocument.java:1201)

at com.orientechnologies.orient.core.record.impl.ODocument.rawField(ODocument.java:493)

at com.orientechnologies.orient.core.record.impl.ODocument.field(ODocument.java:515)

at com.orientechnologies.orient.core.type.tree.provider.OMVRBTreeRIDProvider.fromDocument(OMVRBTreeRIDProvider.java:286)

at com.orientechnologies.orient.core.type.tree.provider.OMVRBTreeRIDProvider.fromStream(OMVRBTreeRIDProvider.java:171)

at com.orientechnologies.orient.core.type.tree.provider.OMVRBTreeRIDProvider.lazyUnmarshall(OMVRBTreeRIDProvider.java:208)

at com.orientechnologies.orient.core.type.tree.OMVRBTreeRID.hashedSize(OMVRBTreeRID.java:218)

at com.orientechnologies.orient.core.type.tree.OMVRBTreeRID.size(OMVRBTreeRID.java:211)

at com.orientechnologies.orient.core.type.tree.OMVRBTreeRIDSet.size(OMVRBTreeRIDSet.java:79)

at com.orientechnologies.common.collection.OMultiValue.getSize(OMultiValue.java:74)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerSchemaAware2CSV.toString(ORecordSerializerSchemaAware2CSV.java:161)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerStringAbstract.toStream(ORecordSerializerStringAbstract.java:87)

at com.orientechnologies.orient.core.serialization.serializer.record.string.ORecordSerializerSchemaAware2CSV.toStream(ORecordSerializerSchemaAware2CSV.java:475)

at com.orientechnologies.orient.core.record.ORecordSchemaAwareAbstract.toStream(ORecordSchemaAwareAbstract.java:118)

at com.orientechnologies.orient.core.record.ORecordSchemaAwareAbstract.toStream(ORecordSchemaAwareAbstract.java:113)

at com.orientechnologies.orient.core.record.impl.ODocument.toStream(ODocument.java:378)

at com.orientechnologies.orient.core.db.tool.ODatabaseExport.exportRecords(ODatabaseExport.java:196)