Well, it should be fine. One thing I do is for containers that are the same container, just sometimes restarted, I have been setting the hostname in the container to the host's hostname - the container name. So container "test" running on host "node1001" would be "node1001-test".
This way metrics from every incarnation of the "test" container on "node1001" would be tagged the same, but there won't be duplicates.
-Jonathan