Hi to everyone, i was wondering if there is any standard way to validate the results obtained by meme's suite.
In particular, first i used MEME to define some TFBS (properly validated with TOMTOM against JASPAR) and then search them against a custom database of promoter regions with FIMO.
So my question, there is a common way to validate those results? rather than discriminating by q-value?
i was thinking a sort of cross-validation by performing a similar search against another organism (maybe like A. thaliana) where the TFBS where already described, but i'm not quite sure if this is correct.
Any help would be very appreciated
Best regards!