FIMO

[Agustina Pascual‏]

HELLO!!
I have a problem to run FIMO by command line.
I use as input a motif file obtain from jaspar2meme conversion utilities, and always have this error:

Errors from MEME text parser:
The background frequencies were ordered �� � but for DNA they must be ordered ACGT to ensure consistancy with the motif matricies.
The frequencies do not sum to 1.
FATAL: No motifs could be read.


Any help please???


Thanks! Agus

[CharlesEGrant‏]

It looks like there is something wrong with the motif file you are trying to use. If you could forward us a copy of it, and the command line you used to generate it, that would help us troubleshoot the problem.

[Agustina Pascual‏]

Thanks!!! I could i could troubleshoot the problem... Was a mistake in the motifs file.