Libmpi not found

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Arup Ghosh

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Nov 1, 2016, 10:41:14 AM11/1/16
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After running the following command I'm getting the quoted error:

meme-chip -meme-p 15 -oc meme_test regions.fa

Error:

Starting getsize: getsize meme_test/regions.fa 1> $metrics
/apps/meme/bin/getsize: error while loading shared libraries: libmpi.so.12: cannot open shared object file: No such file or directory
getsize exited
with error code 127
getsize failed me
... at /apps/meme/bin/meme-chip line 738.
 at
/apps/meme/bin/meme-chip line 98.
    main
::__ANON__('getsize failed me... at /apps/meme/bin/meme-chip line 738.\x{a}') called at /apps/meme/bin/meme-chip line 738
    main
::get_sequences('HASH(0xaa1bd0)', 'HASH(0x1699780)', 'HASH(0x169bcd0)') called at /apps/meme/bin/meme-chip line 1599

    main
::main() called at /apps/meme/bin/meme-chip line 141

So, tried to locate the file and the library was present on

/usr/local/lib/libmpi.so.12


Arup Ghosh

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Nov 1, 2016, 11:03:52 AM11/1/16
to MEME Suite Q&A
Solved by defining LD_LIBRARY_PATH

LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/local/lib/


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