Make problem

[Liam Atkinson]

I get the following problem when running make, but I can't work out what it means:

make[4]: Entering directory '/home/lpa24/meme_4.10.2/src'

/bin/bash ../libtool  --tag=CC   --mode=link gcc  -I../src/libxml2/include -I/home/lpa24/anaconda/include -I/home/lpa24/anaconda/include/libxml2  -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__   -O3   -o ama ama-ama.o libcommon.la ../src/libxml2/libxml2.la -L/home/lpa24/anaconda/lib -lxslt -lxml2 -lz -ldl -lm -lrt -lexslt -lz -lm

libtool: link: gcc -I../src/libxml2/include -I/home/lpa24/anaconda/include -I/home/lpa24/anaconda/include/libxml2 -Wall -Wno-unused -DUNIX -D__USE_FIXED_PROTOTYPES__ -O3 -o ama ama-ama.o  ./.libs/libcommon.a -L/home/lpa24/anaconda/lib ../src/libxml2/.libs/libxml2.a /home/lpa24/anaconda/lib/libexslt.so /home/lpa24/anaconda/lib/libxslt.so /home/lpa24/anaconda/lib/libxml2.so -ldl -lrt -lz -lm -Wl,-rpath -Wl,/home/lpa24/anaconda/lib -Wl,-rpath -Wl,/home/lpa24/anaconda/lib

./.libs/libcommon.a(libcommon_la-mtwist.o): In function `mts_lrand':

mtwist.c:(.text+0x230): multiple definition of `mts_lrand'

./.libs/libcommon.a(libcommon_la-utils.o):utils.c:(.text+0x0): first defined here

./.libs/libcommon.a(libcommon_la-mtwist.o): In function `mts_llrand':

mtwist.c:(.text+0x290): multiple definition of `mts_llrand'

./.libs/libcommon.a(libcommon_la-utils.o):utils.c:(.text+0x60): first defined here

./.libs/libcommon.a(libcommon_la-mtwist.o): In function `mts_drand':

mtwist.c:(.text+0x360): multiple definition of `mts_drand'

./.libs/libcommon.a(libcommon_la-utils.o):utils.c:(.text+0x130): first defined here

./.libs/libcommon.a(libcommon_la-mtwist.o): In function `mts_ldrand':

mtwist.c:(.text+0x3d0): multiple definition of `mts_ldrand'

./.libs/libcommon.a(libcommon_la-utils.o):utils.c:(.text+0x1a0): first defined here

./.libs/libcommon.a(libcommon_la-mtwist.o): In function `mt_lrand':

mtwist.c:(.text+0x4e0): multiple definition of `mt_lrand'

./.libs/libcommon.a(libcommon_la-utils.o):utils.c:(.text+0x2b0): first defined here

./.libs/libcommon.a(libcommon_la-mtwist.o): In function `mt_llrand':

mtwist.c:(.text+0x540): multiple definition of `mt_llrand'

./.libs/libcommon.a(libcommon_la-utils.o):utils.c:(.text+0x310): first defined here

./.libs/libcommon.a(libcommon_la-mtwist.o): In function `mt_drand':

mtwist.c:(.text+0x620): multiple definition of `mt_drand'

./.libs/libcommon.a(libcommon_la-utils.o):utils.c:(.text+0x3f0): first defined here

./.libs/libcommon.a(libcommon_la-mtwist.o): In function `mt_ldrand':

mtwist.c:(.text+0x690): multiple definition of `mt_ldrand'

./.libs/libcommon.a(libcommon_la-utils.o):utils.c:(.text+0x460): first defined here

collect2: error: ld returned 1 exit status

Makefile:1565: recipe for target 'ama' failed

make[4]: *** [ama] Error 1

make[4]: Leaving directory '/home/lpa24/meme_4.10.2/src'

Makefile:4083: recipe for target 'all-recursive' failed

make[3]: *** [all-recursive] Error 1

make[3]: Leaving directory '/home/lpa24/meme_4.10.2/src'

Makefile:1463: recipe for target 'all' failed

make[2]: *** [all] Error 2

make[2]: Leaving directory '/home/lpa24/meme_4.10.2/src'

Makefile:699: recipe for target 'all-recursive' failed

make[1]: *** [all-recursive] Error 1

make[1]: Leaving directory '/home/lpa24/meme_4.10.2'

Makefile:630: recipe for target 'all' failed

make: *** [all] Error 2

What might be the problem? As far as I am aware, I have installed all the prereq software.

[CharlesEGrant]

My first guess is that your system has a version of libxml2 or libxslt that has already has a copy of the Twistor random number generator built into it.

Try rerunning './configure' add the options '--enable-buld-libxml2' and '--enable-build-libxslt', and then run 'make clean' and 'make'. This will force the MEME Suite to build its on copy of the libxml2 and libxslt libraries.

[Gun Woo Byeon]

I have the exact same problem (with the libxml2 and libxslt flags enabled). Any suggestion how to track down the problem?

[CharlesEGrant]

Did you run 'make clean' after running 'configure' with the libxml2 and libxslt flags?

[CharlesEGrant]

It looks like this may be caused by changes to the default C standard in recent versions of GCC. Which version of GCC are you using?

If you are using GCC 5.1 or later, try this:

make clean

make AM_CFLAGS="-std=gnu89"

Charles

[Talon Trecek]

Hello,

I am receiving the exact same errors.

I have tried the suggestions here,

 './configure' add the options '--enable-buld-libxml2' and '--enable-build-libxslt', and then run 'make clean' and 'make')

&

make clean

make AM_CFLAGS="-std=gnu89"

(I have GCC (Ubuntu 5.2.1-22ubuntu2) 5.2.1 20151010 )

Neither of these worked

When I first tried it was a fresh install of Ubuntu 15.04 64bit (exception of installing openmpi installed, and checking meme requirements).

Below are the outputs I got for each attempt.

This is just using make > make.log without --enable-buld-libxml2' and '--enable-build-libxslt

ar: `u' modifier ignored since `D' is the default (see `U')
alphabet.c: In function ‘extrapolate_markov_model’:
alphabet.c:1069:18: warning: ‘index_word’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       index_word -= 1;
                  ^
In file included from utils.h:17:0,
                 from sax-parser-utils.h:7,
                 from cisml-sax.c:17:
macros.h:294:0: warning: "FALSE" redefined
 #define FALSE false
 ^
In file included from /usr/include/x86_64-linux-gnu/unicode/utypes.h:36:0,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv_err.h:86,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv.h:50,
                 from /usr/include/libxml2/libxml/encoding.h:31,
                 from /usr/include/libxml2/libxml/parser.h:810,
                 from cisml-sax.h:11,
                 from cisml-sax.c:16:
/usr/include/x86_64-linux-gnu/unicode/umachine.h:242:0: note: this is the location of the previous definition
 #   define FALSE 0
 ^
In file included from utils.h:17:0,
                 from sax-parser-utils.h:7,
                 from cisml-sax.c:17:
macros.h:295:0: warning: "TRUE" redefined
 #define TRUE true
 ^
In file included from /usr/include/x86_64-linux-gnu/unicode/utypes.h:36:0,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv_err.h:86,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv.h:50,
                 from /usr/include/libxml2/libxml/encoding.h:31,
                 from /usr/include/libxml2/libxml/parser.h:810,
                 from cisml-sax.h:11,
                 from cisml-sax.c:16:
/usr/include/x86_64-linux-gnu/unicode/umachine.h:238:0: note: this is the location of the previous definition
 #   define TRUE  1
 ^
In file included from utils.h:17:0,
                 from array.h:13,
                 from matrix.h:13,
                 from motif.h:12,
                 from motif-in-dreme-xml.h:5,
                 from motif-in-dreme-xml.c:9:
macros.h:294:0: warning: "FALSE" redefined
 #define FALSE false
 ^
In file included from /usr/include/x86_64-linux-gnu/unicode/utypes.h:36:0,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv_err.h:86,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv.h:50,
                 from /usr/include/libxml2/libxml/encoding.h:31,
                 from /usr/include/libxml2/libxml/parser.h:810,
                 from dreme-sax.h:5,
                 from motif-in-dreme-xml.c:7:
/usr/include/x86_64-linux-gnu/unicode/umachine.h:242:0: note: this is the location of the previous definition
 #   define FALSE 0
 ^
In file included from utils.h:17:0,
                 from array.h:13,
                 from matrix.h:13,
                 from motif.h:12,
                 from motif-in-dreme-xml.h:5,
                 from motif-in-dreme-xml.c:9:
macros.h:295:0: warning: "TRUE" redefined
 #define TRUE true
 ^
In file included from /usr/include/x86_64-linux-gnu/unicode/utypes.h:36:0,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv_err.h:86,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv.h:50,
                 from /usr/include/libxml2/libxml/encoding.h:31,
                 from /usr/include/libxml2/libxml/parser.h:810,
                 from dreme-sax.h:5,
                 from motif-in-dreme-xml.c:7:
/usr/include/x86_64-linux-gnu/unicode/umachine.h:238:0: note: this is the location of the previous definition
 #   define TRUE  1
 ^
In file included from utils.h:17:0,
                 from array.h:13,
                 from matrix.h:13,
                 from build-hmm.h:11,
                 from read-mhmm.c:18:
macros.h:294:0: warning: "FALSE" redefined
 #define FALSE false
 ^
In file included from /usr/include/x86_64-linux-gnu/unicode/utypes.h:36:0,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv_err.h:86,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv.h:50,
                 from /usr/include/libxml2/libxml/encoding.h:31,
                 from /usr/include/libxml2/libxml/parser.h:810,
                 from read-mhmm.c:11:
/usr/include/x86_64-linux-gnu/unicode/umachine.h:242:0: note: this is the location of the previous definition
 #   define FALSE 0
 ^
In file included from utils.h:17:0,
                 from array.h:13,
                 from matrix.h:13,
                 from build-hmm.h:11,
                 from read-mhmm.c:18:
macros.h:295:0: warning: "TRUE" redefined
 #define TRUE true
 ^
In file included from /usr/include/x86_64-linux-gnu/unicode/utypes.h:36:0,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv_err.h:86,
                 from /usr/include/x86_64-linux-gnu/unicode/ucnv.h:50,
                 from /usr/include/libxml2/libxml/encoding.h:31,
                 from /usr/include/libxml2/libxml/parser.h:810,
                 from read-mhmm.c:11:
/usr/include/x86_64-linux-gnu/unicode/umachine.h:238:0: note: this is the location of the previous definition
 #   define TRUE  1
 ^
ar: `u' modifier ignored since `D' is the default (see `U')

`mt_ldrand'

make[4]: *** [alphtype] Error 1

make[3]: *** [all-recursive] Error 1

make[2]: *** [all] Error 2

make[1]: *** [all-recursive] Error 1

make: *** [all] Error 2

This is using --enable-buld-libxml2' and '--enable-build-libxslt (no AM_CFLAG)

make > make_with_libs

ar: `u' modifier ignored since `D' is the default (see `U')
ar: `u' modifier ignored since `D' is the default (see `U')
ar: `u' modifier ignored since `D' is the default (see `U')
ar: `u' modifier ignored since `D' is the default (see `U')
alphabet.c: In function ‘extrapolate_markov_model’:
alphabet.c:1069:18: warning: ‘index_word’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       index_word -= 1;
                  ^
ar: `u' modifier ignored since `D' is the default (see `U')

`mt_ldrand'

make[4]: *** [alphtype] Error 1

make[3]: *** [all-recursive] Error 1

make[2]: *** [all] Error 2

make[1]: *** [all-recursive] Error 1

make: *** [all] Error 2

This is with flags and lib build specified

ar: `u' modifier ignored since `D' is the default (see `U')
ar: `u' modifier ignored since `D' is the default (see `U')
ar: `u' modifier ignored since `D' is the default (see `U')
ar: `u' modifier ignored since `D' is the default (see `U')
alphabet.c: In function ‘extrapolate_markov_model’:
alphabet.c:1069:18: warning: ‘index_word’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       index_word -= 1;
                  ^
ar: `u' modifier ignored since `D' is the default (see `U')
../meme-branching_search.o: In function `mts_lrand':
branching_search.c:(.text+0x1a0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-branching_search.o: In function `mts_llrand':
branching_search.c:(.text+0x200): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-branching_search.o: In function `mts_drand':
branching_search.c:(.text+0x2d0): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-branching_search.o: In function `mts_ldrand':
branching_search.c:(.text+0x340): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-branching_search.o: In function `mt_lrand':
branching_search.c:(.text+0x450): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-branching_search.o: In function `mt_llrand':
branching_search.c:(.text+0x4c0): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-branching_search.o: In function `mt_drand':
branching_search.c:(.text+0x5a0): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-branching_search.o: In function `mt_ldrand':
branching_search.c:(.text+0x620): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-calculate_p_y.o: In function `mts_lrand':
calculate_p_y.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-calculate_p_y.o: In function `mts_llrand':
calculate_p_y.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-calculate_p_y.o: In function `mts_drand':
calculate_p_y.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-calculate_p_y.o: In function `mts_ldrand':
calculate_p_y.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-calculate_p_y.o: In function `mt_lrand':
calculate_p_y.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-calculate_p_y.o: In function `mt_llrand':
calculate_p_y.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-calculate_p_y.o: In function `mt_drand':
calculate_p_y.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-calculate_p_y.o: In function `mt_ldrand':
calculate_p_y.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-discretize.o: In function `mts_lrand':
discretize.c:(.text+0x19b0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-discretize.o: In function `mts_llrand':
discretize.c:(.text+0x1a10): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-discretize.o: In function `mts_drand':
discretize.c:(.text+0x1ae0): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-discretize.o: In function `mts_ldrand':
discretize.c:(.text+0x1b50): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-discretize.o: In function `mt_lrand':
discretize.c:(.text+0x1c60): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-discretize.o: In function `mt_llrand':
discretize.c:(.text+0x1cd0): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-discretize.o: In function `mt_drand':
discretize.c:(.text+0x1db0): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-discretize.o: In function `mt_ldrand':
discretize.c:(.text+0x1e30): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-display.o: In function `mts_lrand':
display.c:(.text+0x17c0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-display.o: In function `mts_llrand':
display.c:(.text+0x1820): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-display.o: In function `mts_drand':
display.c:(.text+0x18f0): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-display.o: In function `mts_ldrand':
display.c:(.text+0x1960): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-display.o: In function `mt_lrand':
display.c:(.text+0x1a70): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-display.o: In function `mt_llrand':
display.c:(.text+0x1ae0): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-display.o: In function `mt_drand':
display.c:(.text+0x1bc0): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-display.o: In function `mt_ldrand':
display.c:(.text+0x1c40): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-dpalign.o: In function `mts_lrand':
dpalign.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-dpalign.o: In function `mts_llrand':
dpalign.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-dpalign.o: In function `mts_drand':
dpalign.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-dpalign.o: In function `mts_ldrand':
dpalign.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-dpalign.o: In function `mt_lrand':
dpalign.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-dpalign.o: In function `mt_llrand':
dpalign.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-dpalign.o: In function `mt_drand':
dpalign.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-dpalign.o: In function `mt_ldrand':
dpalign.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-em.o: In function `mts_lrand':
em.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-em.o: In function `mts_llrand':
em.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-em.o: In function `mts_drand':
em.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-em.o: In function `mts_ldrand':
em.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-em.o: In function `mt_lrand':
em.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-em.o: In function `mt_llrand':
em.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-em.o: In function `mt_drand':
em.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-em.o: In function `mt_ldrand':
em.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-exec_parallel.o: In function `mts_lrand':
exec_parallel.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-exec_parallel.o: In function `mts_llrand':
exec_parallel.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-exec_parallel.o: In function `mts_drand':
exec_parallel.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-exec_parallel.o: In function `mts_ldrand':
exec_parallel.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-exec_parallel.o: In function `mt_lrand':
exec_parallel.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-exec_parallel.o: In function `mt_llrand':
exec_parallel.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-exec_parallel.o: In function `mt_drand':
exec_parallel.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-exec_parallel.o: In function `mt_ldrand':
exec_parallel.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-init.o: In function `mts_lrand':
init.c:(.text+0x2e0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-init.o: In function `mts_llrand':
init.c:(.text+0x340): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-init.o: In function `mts_drand':
init.c:(.text+0x410): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-init.o: In function `mts_ldrand':
init.c:(.text+0x480): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-init.o: In function `mt_lrand':
init.c:(.text+0x590): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-init.o: In function `mt_llrand':
init.c:(.text+0x600): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-init.o: In function `mt_drand':
init.c:(.text+0x6e0): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-init.o: In function `mt_ldrand':
init.c:(.text+0x760): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-justlike.o: In function `mts_lrand':
justlike.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-justlike.o: In function `mts_llrand':
justlike.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-justlike.o: In function `mts_drand':
justlike.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-justlike.o: In function `mts_ldrand':
justlike.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-justlike.o: In function `mt_lrand':
justlike.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-justlike.o: In function `mt_llrand':
justlike.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-justlike.o: In function `mt_drand':
justlike.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-justlike.o: In function `mt_ldrand':
justlike.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-likelihood.o: In function `mts_lrand':
likelihood.c:(.text+0x10): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-likelihood.o: In function `mts_llrand':
likelihood.c:(.text+0x70): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-likelihood.o: In function `mts_drand':
likelihood.c:(.text+0x140): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-likelihood.o: In function `mts_ldrand':
likelihood.c:(.text+0x1b0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-likelihood.o: In function `mt_lrand':
likelihood.c:(.text+0x2c0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-likelihood.o: In function `mt_llrand':
likelihood.c:(.text+0x330): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-likelihood.o: In function `mt_drand':
likelihood.c:(.text+0x410): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-likelihood.o: In function `mt_ldrand':
likelihood.c:(.text+0x490): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-llr.o: In function `mts_lrand':
llr.c:(.text+0x900): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-llr.o: In function `mts_llrand':
llr.c:(.text+0x960): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-llr.o: In function `mts_drand':
llr.c:(.text+0xa30): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-llr.o: In function `mts_ldrand':
llr.c:(.text+0xaa0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-llr.o: In function `mt_lrand':
llr.c:(.text+0xbb0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-llr.o: In function `mt_llrand':
llr.c:(.text+0xc20): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-llr.o: In function `mt_drand':
llr.c:(.text+0xd00): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-llr.o: In function `mt_ldrand':
llr.c:(.text+0xd80): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-logs.o: In function `mts_lrand':
logs.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-logs.o: In function `mts_llrand':
logs.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-logs.o: In function `mts_drand':
logs.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-logs.o: In function `mts_ldrand':
logs.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-logs.o: In function `mt_lrand':
logs.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-logs.o: In function `mt_llrand':
logs.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-logs.o: In function `mt_drand':
logs.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-logs.o: In function `mt_ldrand':
logs.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-meme.o: In function `mts_lrand':
meme.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-meme.o: In function `mts_llrand':
meme.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-meme.o: In function `mts_drand':
meme.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-meme.o: In function `mts_ldrand':
meme.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-meme.o: In function `mt_lrand':
meme.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-meme.o: In function `mt_llrand':
meme.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-meme.o: In function `mt_drand':
meme.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-meme.o: In function `mt_ldrand':
meme.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-meme_util.o: In function `mts_lrand':
meme_util.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-meme_util.o: In function `mts_llrand':
meme_util.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-meme_util.o: In function `mts_drand':
meme_util.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-meme_util.o: In function `mts_ldrand':
meme_util.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-meme_util.o: In function `mt_lrand':
meme_util.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-meme_util.o: In function `mt_llrand':
meme_util.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-meme_util.o: In function `mt_drand':
meme_util.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-meme_util.o: In function `mt_ldrand':
meme_util.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-message.o: In function `mts_lrand':
message.c:(.text+0x1d0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-message.o: In function `mts_llrand':
message.c:(.text+0x230): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-message.o: In function `mts_drand':
message.c:(.text+0x300): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-message.o: In function `mts_ldrand':
message.c:(.text+0x370): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-message.o: In function `mt_lrand':
message.c:(.text+0x480): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-message.o: In function `mt_llrand':
message.c:(.text+0x4f0): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-message.o: In function `mt_drand':
message.c:(.text+0x5d0): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-message.o: In function `mt_ldrand':
message.c:(.text+0x650): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-oops.o: In function `mts_lrand':
oops.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-oops.o: In function `mts_llrand':
oops.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-oops.o: In function `mts_drand':
oops.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-oops.o: In function `mts_ldrand':
oops.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-oops.o: In function `mt_lrand':
oops.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-oops.o: In function `mt_llrand':
oops.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-oops.o: In function `mt_drand':
oops.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-oops.o: In function `mt_ldrand':
oops.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-prior.o: In function `mts_lrand':
prior.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-prior.o: In function `mts_llrand':
prior.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-prior.o: In function `mts_drand':
prior.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-prior.o: In function `mts_ldrand':
prior.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-prior.o: In function `mt_lrand':
prior.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-prior.o: In function `mt_llrand':
prior.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-prior.o: In function `mt_drand':
prior.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-prior.o: In function `mt_ldrand':
prior.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-psp.o: In function `mts_lrand':
psp.c:(.text+0x3b0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-psp.o: In function `mts_llrand':
psp.c:(.text+0x410): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-psp.o: In function `mts_drand':
psp.c:(.text+0x4e0): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-psp.o: In function `mts_ldrand':
psp.c:(.text+0x550): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-psp.o: In function `mt_lrand':
psp.c:(.text+0x660): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-psp.o: In function `mt_llrand':
psp.c:(.text+0x6d0): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-psp.o: In function `mt_drand':
psp.c:(.text+0x7b0): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-psp.o: In function `mt_ldrand':
psp.c:(.text+0x830): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-read_seq_file.o: In function `mts_lrand':
read_seq_file.c:(.text+0x800): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-read_seq_file.o: In function `mts_llrand':
read_seq_file.c:(.text+0x860): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-read_seq_file.o: In function `mts_drand':
read_seq_file.c:(.text+0x930): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-read_seq_file.o: In function `mts_ldrand':
read_seq_file.c:(.text+0x9a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-read_seq_file.o: In function `mt_lrand':
read_seq_file.c:(.text+0xab0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-read_seq_file.o: In function `mt_llrand':
read_seq_file.c:(.text+0xb20): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-read_seq_file.o: In function `mt_drand':
read_seq_file.c:(.text+0xc00): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-read_seq_file.o: In function `mt_ldrand':
read_seq_file.c:(.text+0xc80): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-seed_diffs.o: In function `mts_lrand':
seed_diffs.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-seed_diffs.o: In function `mts_llrand':
seed_diffs.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-seed_diffs.o: In function `mts_drand':
seed_diffs.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-seed_diffs.o: In function `mts_ldrand':
seed_diffs.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-seed_diffs.o: In function `mt_lrand':
seed_diffs.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-seed_diffs.o: In function `mt_llrand':
seed_diffs.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-seed_diffs.o: In function `mt_drand':
seed_diffs.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-seed_diffs.o: In function `mt_ldrand':
seed_diffs.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-seq2theta.o: In function `mts_lrand':
seq2theta.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-seq2theta.o: In function `mts_llrand':
seq2theta.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-seq2theta.o: In function `mts_drand':
seq2theta.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-seq2theta.o: In function `mts_ldrand':
seq2theta.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-seq2theta.o: In function `mt_lrand':
seq2theta.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-seq2theta.o: In function `mt_llrand':
seq2theta.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-seq2theta.o: In function `mt_drand':
seq2theta.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-seq2theta.o: In function `mt_ldrand':
seq2theta.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-sp_matrix.o: In function `mts_lrand':
sp_matrix.c:(.text+0x140): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-sp_matrix.o: In function `mts_llrand':
sp_matrix.c:(.text+0x1a0): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-sp_matrix.o: In function `mts_drand':
sp_matrix.c:(.text+0x270): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-sp_matrix.o: In function `mts_ldrand':
sp_matrix.c:(.text+0x2e0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-sp_matrix.o: In function `mt_lrand':
sp_matrix.c:(.text+0x3f0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-sp_matrix.o: In function `mt_llrand':
sp_matrix.c:(.text+0x460): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-sp_matrix.o: In function `mt_drand':
sp_matrix.c:(.text+0x540): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-sp_matrix.o: In function `mt_ldrand':
sp_matrix.c:(.text+0x5c0): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-starts.o: In function `mts_lrand':
starts.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-starts.o: In function `mts_llrand':
starts.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-starts.o: In function `mts_drand':
starts.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-starts.o: In function `mts_ldrand':
starts.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-starts.o: In function `mt_lrand':
starts.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-starts.o: In function `mt_llrand':
starts.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-starts.o: In function `mt_drand':
starts.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-starts.o: In function `mt_ldrand':
starts.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-subseq7.o: In function `mts_lrand':
subseq7.c:(.text+0x490): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-subseq7.o: In function `mts_llrand':
subseq7.c:(.text+0x4f0): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-subseq7.o: In function `mts_drand':
subseq7.c:(.text+0x5c0): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-subseq7.o: In function `mts_ldrand':
subseq7.c:(.text+0x630): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-subseq7.o: In function `mt_lrand':
subseq7.c:(.text+0x740): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-subseq7.o: In function `mt_llrand':
subseq7.c:(.text+0x7b0): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-subseq7.o: In function `mt_drand':
subseq7.c:(.text+0x890): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-subseq7.o: In function `mt_ldrand':
subseq7.c:(.text+0x910): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../meme-tcm.o: In function `mts_lrand':
tcm.c:(.text+0x0): multiple definition of `mts_lrand'
../meme-banner.o:banner.c:(.text+0x0): first defined here
../meme-tcm.o: In function `mts_llrand':
tcm.c:(.text+0x60): multiple definition of `mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../meme-tcm.o: In function `mts_drand':
tcm.c:(.text+0x130): multiple definition of `mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../meme-tcm.o: In function `mts_ldrand':
tcm.c:(.text+0x1a0): multiple definition of `mts_ldrand'
../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../meme-tcm.o: In function `mt_lrand':
tcm.c:(.text+0x2b0): multiple definition of `mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../meme-tcm.o: In function `mt_llrand':
tcm.c:(.text+0x320): multiple definition of `mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../meme-tcm.o: In function `mt_drand':
tcm.c:(.text+0x400): multiple definition of `mt_drand'
../meme-banner.o:banner.c:(.text+0x400): first defined here
../meme-tcm.o: In function `mt_ldrand':
tcm.c:(.text+0x480): multiple definition of `mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here
../.libs/libcommon.a(libcommon_la-mtwist.o): In function `mts_lrand':

mtwist.c:(.text+0x230): multiple definition of `mts_lrand'

../meme-banner.o:banner.c:(.text+0x0): first defined here
../.libs/libcommon.a(libcommon_la-mtwist.o): In function `mts_llrand':

mtwist.c:(.text+0x290): multiple definition of `

mts_llrand'
../meme-banner.o:banner.c:(.text+0x60): first defined here
../.libs/libcommon.a(libcommon_la-mtwist.o): In function `mts_drand':

mtwist.c:(.text+0x360): multiple definition of

`mts_drand'
../meme-banner.o:banner.c:(.text+0x130): first defined here
../.libs/libcommon.a(libcommon_la-mtwist.o): In function `mts_ldrand':

mtwist.c:(.text+0x3d0): multiple definition of `mts_ldrand'

../meme-banner.o:banner.c:(.text+0x1a0): first defined here
../.libs/libcommon.a(libcommon_la-mtwist.o): In function `mt_lrand':

mtwist.c:(.text+0x4e0): multiple definition of `

mt_lrand'
../meme-banner.o:banner.c:(.text+0x2b0): first defined here
../.libs/libcommon.a(libcommon_la-mtwist.o): In function `mt_llrand':

mtwist.c:(.text+0x540): multiple definition of

`mt_llrand'
../meme-banner.o:banner.c:(.text+0x320): first defined here
../.libs/libcommon.a(libcommon_la-mtwist.o): In function `mt_drand':

mtwist.c:(.text+0x620): multiple definition of `mt_drand'

../meme-banner.o:banner.c:(.text+0x400): first defined here
../.libs/libcommon.a(libcommon_la-mtwist.o): In function `mt_ldrand':

mtwist.c:(.text+0x690): multiple definition of `

mt_ldrand'
../meme-banner.o:banner.c:(.text+0x480): first defined here

collect2: error: ld returned 1 exit status

make[4]: *** [meme] Error 1

make[3]: *** [all-recursive] Error 1

make[2]: *** [all] Error 2

make[1]: *** [all-recursive] Error 1

make: *** [all] Error 2

[Talon Trecek]

Okay I have found a solution to my problem.

I installed gcc 4.7 (anything below gcc 5 I think works). Installed through synaptic.

When I used make cmd I specified version 4.7 with 'make CXX=g++-4.7 CC=gcc-4.7' (http://stackoverflow.com/questions/3698441/how-to-use-an-older-version-of-gcc-in-linux)

Everything worked from here.

On another note I had to link the .../openmpi/include files to meme folder as even after including in $PATH the include/ files were not being found.