First of all, Maxent is usually used with presence data, not abundance data. However, there are some newer applications that can estimate abundance from many presence points, but it seems like you just have 3. You'd need to ignore any count data you have and simply input the coordinates of each observation as a single record to use Maxent.
Second, if you only have 3 data points, any model you make will be bad. You'd need a much better sample that represents an even sampling of the environments the species is found in to make any reasonable model (this goes for any statistical model).
For your data, I don't suggest making an abundance or distribution model. I would suggest something more like an ANOVA, like a comparison of some statistics across the three locations. Else, you need data from more sites.
Jamie