The past few weeks have shown a very late, misplaced train issue which may be related to the previously reported late train issue that seemed to have been fixed at one point.
The symptom is that a train is reported as being very late but the vehicle position shows it's where it should be although vehicle status reports it's STOPPED AT somewhere else. No corresponding alert is posted. This has been observed on Haverhill, Lowell and Fitchburg lines.
Attached are captured data on Monday April 9, 2018 taken a bit before 7AM concerning Lowell inbound 302. Attachment 1 is the prediction by stop at North Station which shows predicted arrival as 8:17 vs scheduled arrival at 6:56 with the vehicle's position being very close to North Station (as you would expect for on time), but current status is STOPPED_AT Lowell. (The MBTA site's little train icon was also positioned at Lowell.) Attachment 2 is a get Vehicles by Route type request response with the same vehicle near North Station but STOPPED_AT Lowell response.
Good luck.
Bill