dplyr arrange function worked yesterday 28Feb2018 and does not this AM 01Mar2018....anything to do with the recent commit?
1,997 views
Skip to first unread message
ttu...@ativamed.com
Mar 1, 2018, 9:20:07 AM3/1/18
to manipulatr
The dplyr arrange function worked fine yesterday 28Feb2018 but does not work this AM 01Mar2018....anything to do with the recent commit? Ensured dplyr is installed and loaded. Tested using the .csv file found at:
https://raw.githubusercontent.com/genomicsclass/dagdata/master/inst/extdata/msleep_ggplot2.csv
library(dplyr)
library(magrittr)
msleep <- read.csv("msleep_ggplot2.csv")
head(msleep)
msleep %>% arrange(order) %>% head
Get this in the R console (using RStudio interface):
https://raw.githubusercontent.com/genomicsclass/dagdata/master/inst/extdata/msleep_ggplot2.csv
library(dplyr)
library(magrittr)
msleep <- read.csv("msleep_ggplot2.csv")
head(msleep)
msleep %>% arrange(order) %>% head
Get this in the R console (using RStudio interface):
> msleep <- read.csv("msleep_ggplot2.csv") > head(msleep) name genus vore order conservation sleep_total 1 Cheetah Acinonyx carni Carnivora lc 12.1 2 Owl monkey Aotus omni Primates <NA> 17.0 3 Mountain beaver Aplodontia herbi Rodentia nt 14.4 4 Greater short-tailed shrew Blarina omni Soricomorpha lc 14.9 5 Cow Bos herbi Artiodactyla domesticated 4.0 6 Three-toed sloth Bradypus herbi Pilosa <NA> 14.4 sleep_rem sleep_cycle awake brainwt bodywt 1 NA NA 11.9 NA 50.000 2 1.8 NA 7.0 0.01550 0.480 3 2.4 NA 9.6 NA 1.350 4 2.3 0.1333333 9.1 0.00029 0.019 5 0.7 0.6666667 20.0 0.42300 600.000 6 2.2 0.7666667 9.6 NA 3.850 > msleep %>% arrange(order) %>% head Error in arrange(., order) : could not find function "arrange"
Brandon Hurr
Mar 1, 2018, 9:52:59 AM3/1/18
to ttu...@ativamed.com, manipulatr
Hello,
I just installed the newest version of dplyr and I'm not getting the error that you see. Can you post your session_info()? > devtools::session_info()
Session info ----------------------------------------------------------------------------------------------------------------
setting value
version R version 3.4.3 (2017-11-30)
system x86_64, darwin15.6.0
ui AQUA
language (EN)
collate en_US.UTF-8
tz America/Los_Angeles
date 2018-03-01
Packages --------------------------------------------------------------------------------------------------------------------
package * version date source
assertthat 0.2.0 2017-04-11 cran (@0.2.0)
bindr 0.1.0.9000 2018-03-01 Github (krlmlr/bindr@4b20179)
bindrcpp 0.2.0.9000 2018-03-01 Github (krlmlr/bindrcpp@7553d4f)
curl 3.0 2017-10-06 cran (@3.0)
devtools 1.12.0 2016-12-05 CRAN (R 3.4.0)
digest 0.6.12 2017-01-27 CRAN (R 3.4.0)
dplyr * 0.7.4.9000 2018-03-01 Github (tidyverse/dplyr@27becad)
git2r 0.18.0 2017-01-01 CRAN (R 3.4.0)
glue 1.2.0 2017-10-29 cran (@1.2.0)
httr 1.3.1 2017-08-20 cran (@1.3.1)
knitr 1.17 2017-08-10 CRAN (R 3.4.1)
magrittr 1.5 2014-11-22 cran (@1.5)
memoise 1.1.0 2017-04-21 CRAN (R 3.4.0)
pillar 1.2.1 2018-03-01 Github (r-lib/pillar@2065df9)
pkgconfig 2.0.1 2017-03-21 cran (@2.0.1)
purrr 0.2.4.9000 2018-03-01 Github (tidyverse/purrr@84ce1ad)
R6 2.2.2 2017-06-17 cran (@2.2.2)
Rcpp 0.12.15 2018-01-20 cran (@0.12.15)
rlang 0.2.0.9000 2018-03-01 Github (tidyverse/rlang@9ea33dd)
tibble 1.4.2 2018-03-01 Github (tidyverse/tibble@80ac1a3)
tidyselect 0.2.4 2018-02-26 cran (@0.2.4)
withr 2.1.0.9000 2017-12-09 Github (jimhester/withr@fe81c00)
> msleep <- ggplot2::msleep
> head(msleepp)
Error in head(msleepp) : object 'msleepp' not found
> head(msleep)
# A tibble: 6 x 11
name genus vore order conservation sleep_total sleep_rem sleep_cycle awake brainwt bodywt
<chr> <chr> <chr> <chr> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 Cheetah Acinonyx carni Carnivo… lc 12.1 NA NA 11.9 NA 5.00e+1
2 Owl monkey Aotus omni Primates <NA> 17.0 1.80 NA 7.00 1.55e-2 4.80e-1
3 Mountain beaver Aplodontia herbi Rodentia nt 14.4 2.40 NA 9.60 NA 1.35e+0
4 Greater short-tailed shrew Blarina omni Soricom… lc 14.9 2.30 0.133 9.10 2.90e-4 1.90e-2
5 Cow Bos herbi Artioda… domesticated 4.00 0.700 0.667 20.0 4.23e-1 6.00e+2
6 Three-toed sloth Bradypus herbi Pilosa <NA> 14.4 2.20 0.767 9.60 NA 3.85e+0
> msleep %>% arrange(order) %>% head
# A tibble: 6 x 11
name genus vore order conservation sleep_total sleep_rem sleep_cycle awake brainwt bodywt
<chr> <chr> <chr> <chr> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 Tenrec Tenrec omni Afrosoricida <NA> 15.6 2.30 NA 8.40 0.00260 0.900
2 Cow Bos herbi Artiodactyla domesticated 4.00 0.700 0.667 20.0 0.423 600.
3 Roe deer Capreolus herbi Artiodactyla lc 3.00 NA NA 21.0 0.0982 14.8
4 Goat Capri herbi Artiodactyla lc 5.30 0.600 NA 18.7 0.115 33.5
5 Giraffe Giraffa herbi Artiodactyla cd 1.90 0.400 NA 22.1 NA 900.
6 Sheep Ovis herbi Artiodactyla domesticated 3.80 0.600 NA 20.2 0.175 55.5
>
name genus vore order conservation sleep_total sleep_rem sleep_cycle awake brainwt bodywt
<chr> <chr> <chr> <chr> <chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 Tenrec Tenrec omni Afrosoricida <NA> 15.6 2.30 NA 8.40 0.00260 0.900
2 Cow Bos herbi Artiodactyla domesticated 4.00 0.700 0.667 20.0 0.423 600.
3 Roe deer Capreolus herbi Artiodactyla lc 3.00 NA NA 21.0 0.0982 14.8
4 Goat Capri herbi Artiodactyla lc 5.30 0.600 NA 18.7 0.115 33.5
5 Giraffe Giraffa herbi Artiodactyla cd 1.90 0.400 NA 22.1 NA 900.
6 Sheep Ovis herbi Artiodactyla domesticated 3.80 0.600 NA 20.2 0.175 55.5
>
--
You received this message because you are subscribed to the Google Groups "manipulatr" group.
To unsubscribe from this group and stop receiving emails from it, send an email to manipulatr+unsubscribe@googlegroups.com.
To post to this group, send email to manip...@googlegroups.com.
Visit this group at https://groups.google.com/group/manipulatr.
For more options, visit https://groups.google.com/d/optout.
Thomas Turner
Mar 1, 2018, 10:00:26 AM3/1/18
to Brandon Hurr, manipulatr
Hello Brandon,
Thanks for the response…..I determined that the system was looking for a package called ‘pillar’…..once pillar was installed, a successful load of dplyr went through, and the arrange function works well again…..I really appreciate the follow through on this!
Best regards,
Tom Turner
Sent from Mail for Windows 10
--
To unsubscribe from this group and stop receiving emails from it, send an email to manipulatr+...@googlegroups.com.
ttu...@ativamed.com
Mar 1, 2018, 10:08:18 AM3/1/18
to manipulatr
Hello Brandon,
Thanks for the response…..I determined that the system was looking for a package called ‘pillar’…..once pillar was installed, a successful load of dplyr went through, and the arrange function works well again…..I really appreciate the follow through on this!
Best regards,
Tom Turner
jim holtman
Jun 17, 2018, 11:55:56 AM6/17/18
to ttu...@ativamed.com, manipulatr
It seems to work fine for me:
> library(dplyr)
> library(magrittr)
>
> msleep <- read.csv("https://raw.githubusercontent.com/genomicsclass/dagdata/master/inst/extdata/msleep_ggplot2.csv")
> head(msleep)
name genus vore order conservation sleep_total sleep_rem sleep_cycle awake
1 Cheetah Acinonyx carni Carnivora lc 12.1 NA NA 11.9
2 Owl monkey Aotus omni Primates <NA> 17.0 1.8 NA 7.0
3 Mountain beaver Aplodontia herbi Rodentia nt 14.4 2.4 NA 9.6
4 Greater short-tailed shrew Blarina omni Soricomorpha lc 14.9 2.3 0.1333333 9.1
5 Cow Bos herbi Artiodactyla domesticated 4.0 0.7 0.6666667 20.0
6 Three-toed sloth Bradypus herbi Pilosa <NA> 14.4 2.2 0.7666667 9.6
brainwt bodywt
1 NA 50.000
2 0.01550 0.480
3 NA 1.350
4 0.00029 0.019
5 0.42300 600.000
6 NA 3.850
> msleep %>% arrange(order) %>% head
name genus vore order conservation sleep_total sleep_rem sleep_cycle awake brainwt bodywt
1 Tenrec Tenrec omni Afrosoricida <NA> 15.6 2.3 NA 8.4 0.0026 0.900
2 Cow Bos herbi Artiodactyla domesticated 4.0 0.7 0.6666667 20.0 0.4230 600.000
3 Roe deer Capreolus herbi Artiodactyla lc 3.0 NA NA 21.0 0.0982 14.800
4 Goat Capri herbi Artiodactyla lc 5.3 0.6 NA 18.7 0.1150 33.500
5 Giraffe Giraffa herbi Artiodactyla cd 1.9 0.4 NA 22.1 NA 899.995
6 Sheep Ovis herbi Artiodactyla domesticated 3.8 0.6 NA 20.2 0.1750 55.500
> sessionInfo()
R version 3.4.2 (2017-09-28)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] bindrcpp_0.2.2 magrittr_1.5 dplyr_0.7.4
loaded via a namespace (and not attached):
[1] compiler_3.4.2 assertthat_0.2.0 R6_2.2.2 tools_3.4.2 pillar_1.2.1 glue_1.2.0
[7] tibble_1.4.2 yaml_2.1.18 Rcpp_0.12.16 pkgconfig_2.0.1 rlang_0.2.0 bindr_0.1.1
>
Did you remember to reload your libraries on that run? You need to include the sessionInfo() to show us what was loaded.
Jim Holtman
Data Munger Guru
What is the problem that you are trying to solve?
Tell me what you want to do, not how you want to do it.
On Thu, Mar 1, 2018 at 6:20 AM, <ttu...@ativamed.com> wrote:
--
You received this message because you are subscribed to the Google Groups "manipulatr" group.
To unsubscribe from this group and stop receiving emails from it, send an email to manipulatr+unsubscribe@googlegroups.com.
Thomas Turner
Jun 17, 2018, 12:02:54 PM6/17/18
to jim holtman, manipulatr
Hello Jim,
Yes, I think I needed to correct my library path to the package….thanks much,
Tom
Thomas James Turner Ph.D., Principal Process Development Engineer
Ativa Medical
1000 Westgate Drive, Suite 100, St. Paul, Minnesota 55114
612-968-0709 Direct
--
To unsubscribe from this group and stop receiving emails from it, send an email to manipulatr+...@googlegroups.com.
Reply all
Reply to author
Forward
0 new messages