[JIRA] [doxygen-plugin] (JENKINS-29938) Unable to serialize is reported when publishing doxygen generate html files

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marcel@mcbeister.de (JIRA)

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Aug 13, 2015, 12:12:01 PM8/13/15
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Marcel Beister created an issue
 
Jenkins / Bug JENKINS-29938
Unable to serialize is reported when publishing doxygen generate html files
Issue Type: Bug Bug
Assignee: Gregory Boissinot
Components: doxygen-plugin
Created: 13/Aug/15 4:11 PM
Environment: Windows 7 x64 master and slave, Jenkins 1.624, Java 7, Doxygen-plugin 0.17
Priority: Critical Critical
Reporter: Marcel Beister

With Doxygen-plugin 0.17, the following error occurs. After switching back to 0.16 the error no longer occurs. The "Doxyfile path" does not have any variables and is relative to the root of the workspace. 

FATAL: error
java.io.IOException: remote file operation failed: C:\Jenkins\Src/ImpactDECLI_Windows at hudson.remoting.Channel@74ac25bf:Lethe: java.io.IOException: Unable to serialize hudson.FilePath$FileCallableWrapper@3fb2cef0
	at hudson.FilePath.act(FilePath.java:987)
	at hudson.FilePath.act(FilePath.java:969)
	at hudson.plugins.doxygen.DoxygenArchiver._perform(DoxygenArchiver.java:223)
	at hudson.plugins.doxygen.DoxygenArchiver.perform(DoxygenArchiver.java:177)
	at hudson.tasks.BuildStepMonitor$2.perform(BuildStepMonitor.java:32)
	at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:779)
	at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:726)
	at hudson.model.Build$BuildExecution.post2(Build.java:185)
	at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:671)
	at hudson.model.Run.execute(Run.java:1766)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
	at hudson.model.ResourceController.execute(ResourceController.java:98)
	at hudson.model.Executor.run(Executor.java:381)
Caused by: java.io.IOException: Unable to serialize hudson.FilePath$FileCallableWrapper@3fb2cef0
	at hudson.remoting.UserRequest.serialize(UserRequest.java:169)
	at hudson.remoting.UserRequest.<init>(UserRequest.java:63)
	at hudson.remoting.Channel.call(Channel.java:776)
	at hudson.FilePath.act(FilePath.java:980)
	... 12 more
Caused by: java.io.NotSerializableException: hudson.plugins.doxygen.DoxygenEnvironmentVariableExpander
	at java.io.ObjectOutputStream.writeObject0(Unknown Source)
	at java.io.ObjectOutputStream.defaultWriteFields(Unknown Source)
	at java.io.ObjectOutputStream.writeSerialData(Unknown Source)
	at java.io.ObjectOutputStream.writeOrdinaryObject(Unknown Source)
	at java.io.ObjectOutputStream.writeObject0(Unknown Source)
	at java.io.ObjectOutputStream.defaultWriteFields(Unknown Source)
	at java.io.ObjectOutputStream.writeSerialData(Unknown Source)
	at java.io.ObjectOutputStream.writeOrdinaryObject(Unknown Source)
	at java.io.ObjectOutputStream.writeObject0(Unknown Source)
	at java.io.ObjectOutputStream.writeObject(Unknown Source)
	at hudson.remoting.UserRequest._serialize(UserRequest.java:158)
	at hudson.remoting.UserRequest.serialize(UserRequest.java:167)
	... 15 more
Build step 'Publish Doxygen' changed build result to FAILURE
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darinpantley@gmail.com (JIRA)

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Aug 14, 2015, 12:26:01 PM8/14/15
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Darin Pantley commented on Bug JENKINS-29938
 
Re: Unable to serialize is reported when publishing doxygen generate html files

I am seeing the same behavior in Linux (Doxygen-plugin 0.17, Jenkins ver. 1.580.3):

Publishing Doxygen HTML results.
FATAL: error
java.io.IOException: remote file operation failed: /work/jenkins/workspace/pipeline_generate-doxygen at hudson.remoting.Channel@11de1573:il-slave11: java.io.IOException: Unable to serialize hudson.FilePath$FileCallableWrapper@54b78bf8
	at hudson.FilePath.act(FilePath.java:976)
	at hudson.FilePath.act(FilePath.java:958)
	at hudson.plugins.doxygen.DoxygenArchiver._perform(DoxygenArchiver.java:223)
	at hudson.plugins.doxygen.DoxygenArchiver.perform(DoxygenArchiver.java:177)
	at hudson.tasks.BuildStepMonitor$2.perform(BuildStepMonitor.java:32)
	at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:770)
	at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:734)
	at hudson.model.Build$BuildExecution.post2(Build.java:183)
	at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:683)
	at hudson.model.Run.execute(Run.java:1770)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
	at hudson.model.ResourceController.execute(ResourceController.java:89)
	at hudson.model.Executor.run(Executor.java:240)
Caused by: java.io.IOException: Unable to serialize hudson.FilePath$FileCallableWrapper@54b78bf8
	at hudson.remoting.UserRequest.serialize(UserRequest.java:169)
	at hudson.remoting.UserRequest.<init>(UserRequest.java:63)
	at hudson.remoting.Channel.call(Channel.java:750)
	at hudson.FilePath.act(FilePath.java:969)
	... 12 more
Caused by: java.io.NotSerializableException: hudson.plugins.doxygen.DoxygenEnvironmentVariableExpander
	at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1183)
	at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1547)
	at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1508)
	at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
	at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
	at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1547)
	at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1508)
	at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
	at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
	at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:347)
	at hudson.remoting.UserRequest._serialize(UserRequest.java:158)
	at hudson.remoting.UserRequest.serialize(UserRequest.java:167)
	... 15 more
Build step 'Publish Doxygen' changed build result to FAILURE
Finished: FAILURE

darinpantley@gmail.com (JIRA)

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Aug 14, 2015, 12:39:01 PM8/14/15
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Oops. I was giving it the path to the published HTML files instead of the Doxyfile. I've switched my job to use "Publish Javadoc" instead of "Publish Doxygen" and no longer face this issue.

The error thrown by this code is not helpful.

marcel@mcbeister.de (JIRA)

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Aug 17, 2015, 3:22:03 AM8/17/15
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Did you try to switch the path to the Doxyfile with plugin 0.17?
Btw. the path in my project was and still is a path to the doxyfile and not to the html folder.

Sebastian.Troy@phabrix.com (JIRA)

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Aug 25, 2015, 4:37:01 AM8/25/15
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I can reaffirm Marcel Beister's issue. As he is, I'm specifying a path to my Doxyfile (which is in the root directory) and I'm getting the exact same exception. I cannot confirm whether switching back a version fixes this as I do not have the permission to do so!

Sebastian.Troy@phabrix.com (JIRA)

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Aug 25, 2015, 4:39:02 AM8/25/15
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Sebastian Troy edited a comment on Bug JENKINS-29938
I can reaffirm Marcel Beister's issue. As he is, I'm specifying a path to my Doxyfile (which is in the root directory) and I'm getting the exact same exception. I cannot confirm whether switching back a version fixes this as I do not have the permission to do so!



{code:java}

Publishing Doxygen HTML results.
FATAL: error
java.io.IOException: remote file operation failed: /home/jenkins/build/workspace/Qx Trunk Doxygen at hudson.remoting.Channel@1096170:QxBuilder: java.io.IOException: Unable to serialize hudson.FilePath$FileCallableWrapper@5267bc

at hudson.FilePath.act(FilePath.java:987)
at hudson.FilePath.act(FilePath.java:969)
at hudson.plugins.doxygen.DoxygenArchiver._perform(DoxygenArchiver.java:223)
at hudson.plugins.doxygen.DoxygenArchiver.perform(DoxygenArchiver.java:177)
at hudson.tasks.BuildStepMonitor$2.perform(BuildStepMonitor.java:32)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:779)

at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:726)
at hudson.model.Build$BuildExecution.post2(Build.java:185)
at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:671)
at hudson.model.Run.execute(Run.java:1766)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:98)
at hudson.model.Executor.run(Executor.java:381)
Caused by: java.io.IOException: Unable to serialize hudson.FilePath$FileCallableWrapper@5267bc

at hudson.remoting.UserRequest.serialize(UserRequest.java:169)
at hudson.remoting.UserRequest.<init>(UserRequest.java:63)
at hudson.remoting.Channel.call(Channel.java:776)
at hudson.FilePath.act(FilePath.java:980)

... 12 more
Caused by: java.io.NotSerializableException: hudson.plugins.doxygen.DoxygenEnvironmentVariableExpander
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1183)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1547)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1508)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1547)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1508)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:347)
at hudson.remoting.UserRequest._serialize(UserRequest.java:158)
at hudson.remoting.UserRequest.serialize(UserRequest.java:167)
... 15 more
Build step 'Publish Doxygen' changed build result to FAILURE
{code}

Sebastian.Troy@phabrix.com (JIRA)

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Aug 25, 2015, 4:44:02 AM8/25/15
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As an interesting extra, our Jenkins guy seems to think that there is only an issue because we are running Doxygen on a slave, any thoughts?

alexander.merry@nanoporetech.com (JIRA)

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Aug 26, 2015, 10:22:04 AM8/26/15
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Also having this issue. We have absolute paths in our doxygen config. Could that be causing an issue?

Sebastian.Troy@phabrix.com (JIRA)

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Aug 26, 2015, 11:09:01 AM8/26/15
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We aren't using absolute paths, still get the error

slawomir@ezono.com (JIRA)

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Aug 28, 2015, 5:02:04 AM8/28/15
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Happens also on LTS Jenkins 1.609.2 with Linux server and clients.
Doxygen plugin 0.17.
Downgrade to Doxygen plugin 0.16 fixes the problem.

jesper.klit.jensen@intelligrated.com (JIRA)

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Aug 31, 2015, 10:11:03 AM8/31/15
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I can confirm that downgrading to 0.16 fixes my problem.

Sebastian.Troy@phabrix.com (JIRA)

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Sep 25, 2015, 4:35:01 AM9/25/15
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It would seem that Gregory Boissinot has about 40 bugs assigned to him, all marked as Open and Unresolved (none in progress) his Git account also suggests that he hasn't contributed to a Jenkins branch since last year, correct me if I'm wrong, but it doesn't look like a fix is coming any time soon from him!

Sebastian.Troy@phabrix.com (JIRA)

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Oct 28, 2015, 5:27:02 AM10/28/15
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A fix! We were setting "Restrict where this project can be run" to true and farming out the job to a remote. As the issue appears to be with serialising the results and returning them to master, by restricting the job to master we have for the short term got it working.

Sebastian.Troy@phabrix.com (JIRA)

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Nov 12, 2015, 5:26:02 AM11/12/15
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Sebastian Troy edited a comment on Bug JENKINS-29938
* A  fix  work around* ! We were setting "Restrict where this project can be run" to true and farming out the job to a remote. As the issue appears to be with serialising the results and returning them to master, by restricting the job to master we have for the short term got it working.

slawomir@ezono.com (JIRA)

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Nov 17, 2015, 5:12:02 PM11/17/15
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Sebastian.Troy@phabrix.com (JIRA)

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Nov 18, 2015, 5:16:03 AM11/18/15
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Sebastian Troy assigned an issue to Slawomir Czarko
 
Change By: Sebastian Troy
Assignee: Gregory Boissinot Slawomir Czarko

Sebastian.Troy@phabrix.com (JIRA)

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Nov 18, 2015, 5:24:03 AM11/18/15
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Sebastian Troy started work on Bug JENKINS-29938
 
Change By: Sebastian Troy
Status: Open In Progress

scm_issue_link@java.net (JIRA)

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Nov 20, 2015, 4:52:05 PM11/20/15
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SCM/JIRA link daemon commented on Bug JENKINS-29938
 
Re: Unable to serialize is reported when publishing doxygen generate html files

Code changed in jenkins
User: Sławomir Czarko-Wasiutycz
Path:
pom.xml
src/main/java/hudson/plugins/doxygen/DoxygenEnvironmentVariableExpander.java
http://jenkins-ci.org/commit/doxygen-plugin/7c996d3788bf458cc0ecd1c837586a5c6a396fdb
Log:
Fix for bug JENKINS-29938 - Unable to serialize is reported when publishing doxygen generate html files

scm_issue_link@java.net (JIRA)

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Nov 20, 2015, 4:52:05 PM11/20/15
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Code changed in jenkins
User: Sławomir Czarko-Wasiutycz
Path:
pom.xml


Log:
Fix for bug JENKINS-29938 - Unable to serialize is reported when publishing doxygen generate html files

scm_issue_link@java.net (JIRA)

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Nov 20, 2015, 4:52:07 PM11/20/15
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Code changed in jenkins
User: Gregory Boissinot
Path:
pom.xml
src/main/java/hudson/plugins/doxygen/DoxygenEnvironmentVariableExpander.java
http://jenkins-ci.org/commit/doxygen-plugin/29a2bb04766a8c7f5ae75eb1cf242ee8740fc873
Log:
Merge pull request #13 from ezjenkins/master

JENKINS-29938 Unable to serialize is reported when publishing doxygen generate html files

Compare: https://github.com/jenkinsci/doxygen-plugin/compare/196ed7899681...29a2bb04766a

slawomir@ezono.com (JIRA)

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Nov 28, 2015, 6:45:06 AM11/28/15
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Slawomir Czarko resolved as Fixed
 

Fixed in Doxygen-plugin 0.18
Jenkins / Bug JENKINS-29938
Change By: Slawomir Czarko
Status: In Progress Resolved
Resolution: Fixed

marcel@beister.org (JIRA)

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Nov 29, 2015, 7:41:02 AM11/29/15
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Marcel Beister commented on Bug JENKINS-29938
 
Re: Unable to serialize is reported when publishing doxygen generate html files

I can also confirm that the issue was resolved with version 0.18. Thank you.
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