Can you start by downgrading to version 3.x and see whether the problem goes away. If it does, then it's clearly a software regression that we're dealing with here.
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Both boards are showing inconsistent behaviour. I only managed once to show the app firmware on ioiodude for one of the boards (don't know why it worked that time, the procedure was the same for both boards). Now I can't show it for both boards and one of them sometimes works with my smartphone other times doesn't. The other one doesn't work at all. This makes no sense I know...
And about upgrading the firmware with the external power supply: that's what I was trying to say on the first post, it is highly probable that I've done that and also with H position on switch... I can't remember but I think I've done it.
At first the COM ports only appeared in H position. And when in A position they appeared as unknown devices. Now after I did all those tries and procedures I managed to make them recognized as COM ports in both H or A positions.
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Ytai,
Thank you for your answer.
Always "A" position from now on [checked].
No need for external supply [checked].
When you say "should not do any permanent damage (except that the IOIO will not work in a device role)" do you mean it will not never work in device role again after "making the mistake" of flashing in "H" mode? Or do you mean that it simply will not work in device role when in "H" mode and that if we flash it in this mode it will not do any damage? I guess you mean this last one.
And about the USB cable just to make clear: one should use a simple "USB type A to micro-USB type A or B" cable right? No need for OTG on one of the ends of the cable right?
About IOIO not enumerating correctly in non-bootloader mode I think you are totally right. Sometimes it is not recognized as COM Port but as an Unknown USB Device. Also, sometimes I have to keep pluging it in and out and "Find new hardware on Windows" and then "Update driver" using ioio.inf. After doing that it is recognized as COM Port but ioiodude still can't show anything in this mode (non-bootloader). When I plug it out and then in again Windows may recognize it or not and I have to do this process again.
Ytai, I am going to try on a different computer very soon and post updates. Once again, thank you for your answer.
With the IOIO connected to a PC in non-bootloader mode, can you please measure the voltage between GND and the middle leg of the host switch? It should read about 2.1V.
Apparently, flashing doesn't succeed for some reason. Are you using the latest version of IOIODude? Have you tried going through the upgrade process from a different computer?