Doesn't work how? Are you getting the accessory dialog or not even that?
I have the latest firmware, latest HelloIOIO application and Android 4.4.2. To get HelloIOIO starting communication I have to connect the IOIO OTG with the USB cable, switch it on, enable USB debugging and disable USB debugging while the OTG is kept connected and switched on. Just connecting the IOIO OTG and switch it on while USB debugging is switched off doesn't work. Any idea? Thanks.
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What phone is this? Is this its stock OS or some unofficial upgrade? It appears that there might be something wrong at the USB layer, were bytes are either being read multiple times or the IOIO loses connection. There's also a small chance that this is power related. What power supply are you using?
Some Bluetooth dongles are less likely than others to exhibit such problems. Try different ones. It is also fairly simple to reduce the analog sampling rate in firmware.