IGV does not show me the annotation

[Chano Acosta]

Hello,

we have some RNA-seq data about our bacteria and we are able to load them in IGV. We load the genome reference in fasta format and the data in .bam format, but the problem appears when we load the annotation that we download from NCBI in .gff format. The IGV is able to recognise it but it does not load any annotation.

Here you are the annotation file link: http://www.ncbi.nlm.nih.gov/genome/3067?genome_assembly_id=172878 

In addition I have attached a image of the IGV with all the files loaded 

Thank you for your help

Sebastián

[Jim Robinson]

Did you check the sequence names in the gff file to insure that they match the sequence names (chromosome, contigs, etc) in the fasta file?

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