Can not find hg38 in the server?

Yang YU

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Apr 11, 2018, 11:36:07 AM4/11/18

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hi,
I tried to load genome hg38 from the server. But I can not find it.

version 2.4.10
windows 10
2GB

thx,

yuy

James Robinson

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Apr 11, 2018, 6:22:53 PM4/11/18

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I can't reproduce this problem. Could you select "View > Preferences > Advanced" and tell us wha'ts in the "Genome Server URL" field?

You might also try quitting IGV and deleting the "igv/genomes" folder.

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Yang YU

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Apr 12, 2018, 3:35:07 PM4/12/18

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the "Genome Server URL" is http://www.broadinstitute.org/igv/projects/genomes/genomes.txt

seems different with yours?

best,

yang

On Wednesday, April 11, 2018 at 6:22:53 PM UTC-4, Jim Robinson wrote:

I can't reproduce this problem. Could you select "View > Preferences > Advanced" and tell us wha'ts in the "Genome Server URL" field?

You might also try quitting IGV and deleting the "igv/genomes" folder.

On Wed, Apr 11, 2018 at 8:36 AM, Yang YU <yuyan...@gmail.com> wrote:

hi,
I tried to load genome hg38 from the server. But I can not find it.
version 2.4.10
windows 10
2GB

thx,
yuy

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James Robinson

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Apr 12, 2018, 4:27:39 PM4/12/18

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Yes, that is an outdated file. Did you set this manually at some point in the past?

Try clicking "reset to defaults".

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James Robinson

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Apr 12, 2018, 4:28:02 PM4/12/18

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After resetting you will have to restart.

Yang YU

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Apr 12, 2018, 4:52:04 PM4/12/18

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Yes. I changed it long time ago in previous IGV version.

It works now! thank you!

best,

yang

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