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Bed features are not displayed in whole-genome view, rather the density of features. Bed format support was designed for annotation features (like genes), not really for numeric data such as copy number.
On Sat, Jun 3, 2017 at 1:10 PM, Jennifer Hauenstein <jenhaue...@gmail.com> wrote:
I am trying to show copy number data in a BED format in IGV. I can see the different colors I have denoted when I go to a particular chromosome but not when viewing the whole genome. How can I see my colors on the whole genome view?
Thank you~
Jen
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