viewing CLIP mutation data in IGV

[amm...@geisinger.edu]

I need someone to please explain to me how a substitution mutation (detected by PIPE-CLIP) due to UV crosslinking in a CLIP dataset will appear in IGV as compared to the non UV crosslinked sample? ANd then, again to look in the actual RNA CLIP'd sample?

I can post a screen shot if that will help?

[Jim Robinson]

Hi,  I'm not familiar enough with the technologies referenced to comment.   Perhaps a screenshot would help clarify.