What does underlined sequence in coverage track mean?

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Sophie

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Nov 29, 2016, 2:29:05 AM11/29/16
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Under coverage track a specific region out of the covered region (that is not
the whole region) is underlined in black; "Interval [12345-678910] 12345 reads
removed (numbers just as fictive example), see example in attachment.
Does this relate to Downsampling? - but why does it not apply to the entire
covered region, only a part of it?
Looking forward to your reply.
File illustrating question 161128.bmp
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