Cannot open IGV2.3

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Salwani Harish

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Nov 2, 2015, 3:22:56 AM11/2/15
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Hi,

I know that some people already posted this problems but when I try the solutions, nothing worked out for me.
This is my java version:
java version "1.6.0_36"
OpenJDK Runtime Environment (IcedTea6 1.13.8) (6b36-1.13.8-0ubuntu1~14.04)
OpenJDK 64-Bit Server VM (build 23.25-b01, mixed mode)

and this is what happen when i follow the instruction from the readme.txt in the IGV2.3 file

user@user$ java -Xmx750m -jar igv.jar

INFO [2015-11-02 16:18:38,725]  [DirectoryManager.java:163] [main]  IGV Directory: /home/user/igv
INFO [2015-11-02 16:18:38,725] [DirectoryManager.java:163]  IGV Directory: /home/user/igv
INFO [2015-11-02 16:18:38,729]  [Main.java:99] [main]  Startup  IGV Version 2.3.63 (90)10/30/2015 11:41 AM
INFO [2015-11-02 16:18:38,730]  [Main.java:100] [main]  Java 1.6.0_36
INFO [2015-11-02 16:18:38,730]  [DirectoryManager.java:72] [main]  Fetching user directory...
INFO [2015-11-02 16:18:38,839]  [Main.java:101] [main]  Default User Directory: /home/user
INFO [2015-11-02 16:18:38,839]  [Main.java:102] [main]  OS: Linux
ERROR [2015-11-02 16:18:40,423]  [DefaultExceptionHandler.java:49] [main]  Unhandled exception
java.awt.HeadlessException
    at java.awt.GraphicsEnvironment.checkHeadless(GraphicsEnvironment.java:173)
    at java.awt.Window.<init>(Window.java:547)
    at java.awt.Frame.<init>(Frame.java:419)
    at java.awt.Frame.<init>(Frame.java:384)
    at javax.swing.JFrame.<init>(JFrame.java:174)
    at org.broad.igv.ui.Main.main(Main.java:81)
INFO [2015-11-02 16:18:40,425]  [ShutdownThread.java:51] [Thread-3]  Shutting down



Jim Robinson

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Nov 2, 2015, 9:36:50 AM11/2/15
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Hi,

It looks like you have a problem with X Windows, is that installed.  Try running "xclock" and see if that works.   Also, please update your Java to at least 1.7.


Jim
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