Re: [igv-help] not all RefSeq gene are shown in IGV

[Jim Robinson]

Please specify an assembly.  Did you "expand" the track, or are you viewing it collapsed?

There are some transcripts not shown in IGV refseq gene track.

For example:

NR_107005   chr1    -       155996957       156132001

NR_107005       chr16   +       85659813        85787681

I have uploaded a custom track of file refGene.txt.gz downloaded from USCS database. These transcripts are still not shown in the custiom track.

But they are actually in the refseq gene file.

So how it is going or i missing some principles that the refseq gene track shown?

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