installation instructions (that works)

[Attila Heidrich]

Dear Guys!

I have been trying to install ICAT server since a few days, without any real result.

The packed installer doesn't work.
Not even a single component installation works.
No usable clues on what the parameters in .properties files really mean.

Kinda difficult to step further.

To be more specific:

I use Ubuntu 16.04, Oracle Java 8, and Wildfly 10.
MySQL RDBMS, already added to Wildfly as non-XA datasourse (couldn't find info on XA/non-XA anyway)

I recon auth.anon should be the very simple component, should install in a few seconds, but...

.properties:

secure         = false
container      = wildfly
home           = /opt/wildfly-10.1.0.Final
port           = 9990

command:

$ python setup install

results:

Domain's config directory /opt/wildfly-10.1.0.Final/config does not exist
Setup is not complete

Install instructions say home must contain jboss-modules.jar. That's the only directory which contains it by default.

Later I copied jboss-modules.jar to $HOME/icat, and also created a config directory here, now I have got a new error message:

root@icat:~/authn.anon# ./setup install
Traceback (most recent call last):
  File "./setup", line 14, in <module>
    actions, arg, props = getActions("authn_anon-setup.properties", [])
  File "/home/ubuntu/authn.anon/setup_utils.py", line 103, in getActions
    elif container == "wildfly": actions = WildflyActions(props, options)
  File "/home/ubuntu/authn.anon/setup_utils.py", line 308, in __init__
    out, err, rc = self.execute(cmd)
  File "/home/ubuntu/authn.anon/setup_utils.py", line 164, in execute
    proc = subprocess.Popen(cmd, stdout=subprocess.PIPE, stderr=subprocess.PIPE)
  File "/usr/lib/python2.7/subprocess.py", line 711, in __init__
    errread, errwrite)
  File "/usr/lib/python2.7/subprocess.py", line 1343, in _execute_child
    raise child_exception
OSError: [Errno 2] No such file or directory

And this is - I guess - the simplest module.

My main problem is, that:

documentation is very brief, do not really contains the necessary information. no explanation at all
setup env is buggy. there are example .properties files, where the default key names are reported as obsolated
it wouldn't be a problem if installation works, but not at all.

Please help me to install a simple auth and the server!

Attila

[Steve Fisher]

The instructions for the icat.server say in the prerequisites:

A suitable deployed container. The installation scripts support Glassfish and to a lesser extent WildFly. Testing has been carried out with Glassfish 4.0. Glassfish installation instructions are available.

 

Getting WildFly to work is trickier than was expected.  See https://icatproject.org/installation/glassfish/

Steve

[Attila Heidrich]

Thanks for the answer!

I have read that, but I have got some experience with WildFly, this is why I choose that Server.
The .properties files contain some Wildfly specific data as well as for Glassfish.

Anyway, installing Glassfish itself is easy, but the other parts of the installation (ICAT components) still don't work.

I return with more specific data soon.

[jody...@stfc.ac.uk]

Hi Attila,

If it helps I have a Vagrant setup which installs an ICAT, IDS and Topcat on an Ubuntu virtual machine:

https://github.com/icatproject/topcat/blob/master/Vagrantfile

This is to be used for Dev purposes only. But you can build it by first installing VirtualBox, then Vagrant (https://www.vagrantup.com/), if you are using Windows comment out:

config.vm.synced_folder '.', '/vagrant', nfs: true

i.e.:

#config.vm.synced_folder '.', '/vagrant', nfs: true

then run the following:

git clone https://github.com/icatproject/topcat.git
cd topcat
vagrant up

once installed you should be able to use Topcat by going to:

https://localhost:8181/topcat/ping

then make a security exception (because it doesn’t have a valid ssl certificate)

and then by going to:

https://localhost:10080

You can log into "Lorum Ipsum Light Source” with username “root” and password “root”.

Jody

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[jody...@stfc.ac.uk]

Sorry I meant:

http://localhost:10080

(i.e. no “https”)

Jody

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[Attila Heidrich]

Also looks very useful!

I will use the content, but for the first time I try to prevent using Virtualbox. I prefer Docker, but finally I would like to use Openstack.

Better for me first time to follow the installation step-by-step.

A

[Steve Fisher]

It would be useful to know which route you took through the documentation. All the property files are described in some detail.  For example below https://repo.icatproject.org/site/icat/server/4.8.0/ you will find: https://repo.icatproject.org/site/icat/server/4.8.0/installation.html for the icat.server v 4.8.0

Steve

On Thursday, 16 February 2017 13:38:21 UTC, Attila Heidrich wrote:

[Attila Heidrich]

Is it necessary to use the old 32bit versions?

[Steve Fisher]

On Monday, 20 February 2017 09:57:26 UTC, Attila Heidrich wrote:

Is it necessary to use the old 32bit versions?

Old 32 bit versions of what? 

[Attila Heidrich]

Old version of Ubuntu (Trusty), and 32bit version of openjdk.

A

[Attila Heidrich]

I have followed the Vagrantfile. I don't use vagrant, nor VIrtualbox.

A used Ubuntu Xenial on Openstack (openstack image distro, default user is ubuntu)

Since no /home/vagrant, nor /vagrant for the repository, I have
1. created a link named /home/vagrant to /home/ubuntu
2. cloned topcat repository to /home/ubuntu/topcat
3. created a link named /vagrant to /home/ubuntu/topcat


It was ok until the very last step, where I ran into this problem:

ubuntu@icat:~$ topcat build_install
cp: cannot overwrite non-directory '/home/ubuntu/topcat_tmp' with directory '/vagrant/yo'
cp: cannot overwrite non-directory '/home/ubuntu/topcat_tmp' with directory '/vagrant/src'

/home/ubuntu/topcat_tmp is an xml, it seems to be crated by the last command, since no use to remove, or remove AND create as a directory - next run will ended the same erroneous way.

I guess this is somehow related to my symbolic links, but since I have no idea what this step should do, also no idea, how to correct the environment.

Any idea?

Attila

Anyway, I have also tried Oracle java 8, but ids.server installation has been failed. Worked fine with the recommended openjdk.

[jody...@stfc.ac.uk]

Hi Attila,

The Vagrant file is really only to be used as a dev setup (I just thought it might help you with Ubuntu specifics). This might have just confused things a bit.

I have spoken to a colleague and it is recommended that you should go the conventional route of downloading and installing the official releases:

https://icatproject.org/releases/current-release/

If you need any help. Please let us know!

Jody

[jody...@stfc.ac.uk]

Hi Attila,


After creating a glassfish setup, the next thing you need to do is install an Icat authenticator plugin. I would recommend the simple one for now:

https://repo.icatproject.org/site/authn/simple/1.1.0/

So try the following:

wget --quiet https://www.icatproject.org/mvn/repo/org/icatproject/authn.simple/1.1.0/authn.simple-1.1.0-distro.zip
unzip authn.simple-1.1.0-distro.zip
cd authn.simple
cp authn_simple-setup.properties.example authn_simple-setup.properties
cp authn_simple.properties.example authn_simple.properties

now edit authn_simple-setup.properties so it looks something like this:

---
secure = true
container = glassfish
home = /path/to/your/glassfish/root
port = 4848
---

then edit authn_simple.properties so it looks something like this:

----
user.list = root
user.root.password = secret
mechanism = simple
—

then run:

./setup install

if you run:

asadmin list-applications

you should see the plugin in the list. asadmin can be found in glassfish’s bin directory.

Let me know how you get on, and we’ll move on to the next step.

Jody

On 20 Feb 2017, at 15:46, jody...@stfc.ac.uk<mailto:jody...@stfc.ac.uk> wrote:

Hi Attila,

The Vagrant file is really only to be used as a dev setup (I just thought it might help you with Ubuntu specifics). This might have just confused things a bit.

I have spoken to a colleague and it is recommended that you should go the conventional route of downloading and installing the official releases:

https://icatproject.org/releases/current-release/

If you need any help. Please let us know!

Jody

On 20 Feb 2017, at 15:10, Attila Heidrich <attila....@gmail.com<mailto:attila....@gmail.com><mailto:attila....@gmail.com>> wrote:

I have followed the Vagrantfile. I don't use vagrant, nor VIrtualbox.

A used Ubuntu Xenial on Openstack (openstack image distro, default user is ubuntu)

Since no /home/vagrant, nor /vagrant for the repository, I have
1. created a link named /home/vagrant to /home/ubuntu
2. cloned topcat repository to /home/ubuntu/topcat
3. created a link named /vagrant to /home/ubuntu/topcat


It was ok until the very last step, where I ran into this problem:

ubuntu@icat:~$ topcat build_install
cp: cannot overwrite non-directory '/home/ubuntu/topcat_tmp' with directory '/vagrant/yo'
cp: cannot overwrite non-directory '/home/ubuntu/topcat_tmp' with directory '/vagrant/src'

/home/ubuntu/topcat_tmp is an xml, it seems to be crated by the last command, since no use to remove, or remove AND create as a directory - next run will ended the same erroneous way.

I guess this is somehow related to my symbolic links, but since I have no idea what this step should do, also no idea, how to correct the environment.

Any idea?

Attila

Anyway, I have also tried Oracle java 8, but ids.server installation has been failed. Worked fine with the recommended openjdk.


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[Attila Heidrich]

Thanks a lot!

Current status:

I have installed:

authn.simple and icat.server

ubuntu@topcat:~$ asadmin list-applications
authn.simple-1.1.0  <ejb, webservices, web> 
icat.server-4.8.0   <ejb, webservices, web> 
Command list-applications executed successfully.


install doc is pretty OK with your comments :)

Q: In the Vagrantfile, there are "asadmin" calls after every "setup install". these aren't mentioned in the same doc. Are there really needed?

PROBLEM:

install doc contains a test method, but don't tells the dependencies, so it doesn't run. (similar things made me said that the document is not enough)

ubuntu@topcat:~$ bin/testicat https://localhost:8181 db username root password root

Traceback (most recent call last):

  File "bin/testicat", line 7, in <module>
    import requests
ImportError: No module named requests
ubuntu@topcat:~$

The doc only tells I need "suds", but it is definitely not enough.
ubuntu@topcat:~$ apt-cache policy python-suds
python-suds:
  Installed: 0.7~git20150727.94664dd-3

So please guide me the next step!

A

[jody...@stfc.ac.uk]

On 21 Feb 2017, at 10:11, Attila Heidrich <attila....@gmail.com<mailto:attila....@gmail.com>> wrote:

Thanks a lot!

Current status:

I have installed:

authn.simple and icat.server

ubuntu@topcat:~$ asadmin list-applications
authn.simple-1.1.0 <ejb, webservices, web>
icat.server-4.8.0 <ejb, webservices, web>
Command list-applications executed successfully.


install doc is pretty OK with your comments :)

Q: In the Vagrantfile, there are "asadmin" calls after every "setup install". these aren't mentioned in the same doc. Are there really needed?

Basically it tells the Glassfish container to deploy these apps in a specific order e.g. the Icat component depends the authenticator(s) - so they need to be deployed first.

It is mention here:

https://repo.icatproject.org/site/icat/server/4.8.0/installation.html

under “Prerequisites” one of the requirements is "Deployed ICAT authenticators”. But, it is not very obvious how to do this. So yes it is requirer.

The next step is to install the IDS components.

First create a directory structure to store the files in:

mkdir data
mkdir data/ids
mkdir data/ids/cache
mkdir data/ids/archive

The first thing we need to install is a storage plugin. For now we’ll the out-the-box solution, but you can write your so it is tailored to your facility.

wget --quiet http://www.icatproject.org/mvn/repo/org/icatproject/ids.storage_file/1.3.3/ids.storage_file-1.3.3-distro.zip
cd ids.storage_file
cp ids.storage_file-setup.properties.example ids.storage_file-setup.properties
cp ids.storage_file.archive.properties.example ids.storage_file.archive.properties
cp ids.storage_file.main.properties.example ids.storage_file.main.properties

Edit ids.storage_file-setup.properties so it looks like the following:

----
glassfish=/path/to/your/glassfish/root
port=4848
----

Edit ids.storage_file.archive.properties so it looks like the following:

---
dir = /path/to/your/data/ids/archive
---

Edit ids.storage_file.main.properties so it looks like the following:

---
dir =/path/to/your/data/ids
---

then run:

./setup install


Next we’ll install the actual IDS itself.

wget --quiet https://www.icatproject.org/mvn/repo/org/icatproject/ids.server/1.6.0/ids.server-1.6.0-distro.zip
unzip -q ids.server-1.6.0-distro.zip
cd ids.server
cp /vagrant/provision/ids.properties ids.server/ids.properties
cp /vagrant/provision/ids-setup.properties ids.server/ids-setup.properties

Edit ids.server/ids.properties so it looks like the following:

---
secure = true
container = Glassfish

home = /path/to/your/glassfish/root
port = 4848

libraries=ids.storage_file*.jar
---

Edit /ids-setup.properties so it looks like the following:

—
icat.url = https://localhost:8181

plugin.zipMapper.class = org.icatproject.ids.storage.ZipMapper

plugin.main.class = org.icatproject.ids.storage.MainFileStorage
plugin.main.properties = ids.storage_file.main.properties

cache.dir = /path/to/your/data/ids/cache
preparedCount = 10000
processQueueIntervalSeconds = 5
rootUserNames = root
sizeCheckIntervalSeconds = 60
reader = simple username root password secret
maxIdsInQuery = 1000
filesCheck.parallelCount = 0
linkLifetimeSeconds = 3600
---

the run:

./setup install

Let me know how you get on.

Jody

[Jody Salt]

I'm  posting this again as google groups has mess the quoting up:

[Steve Fisher]

I hope you ran the setup-glassfish.py as described in https://icatproject.org/installation/glassfish/ before installing components. If not then I suggest manually running the commands at the end of the file or more simply run the script and just rerun "./setup install -v" for each component.

Steve

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[Solca Jan (PSI)]

Hi Attila

 

I’d like to contribute to this discussion with my two cents but there is a step-by-step installation doc here the link https://github.com/icatproject-contrib/docs/blob/master/ICAT.pdf.  I regret that you cannot find the link on the icatproject Homepage. I made this doc years ago, it is not truly accurate anymore BUT I think you can get some hints and tricks for installing a complete ICAT software  from the server component up to TOPCAT (here v1) GUI.. Furthermore I could may provide you my latest Installation LOG for cat-server 4.6.1 and TopCAT v2. 

I fully understand that an ICAT installation can be really tricky for  a  “newcomer” (sorry for the inappropriate wording) due to a lack of clear installation documentation. Once you have made one or two installations you will be more confident  with the procedure. What was important afair was the order on how the components are installed. If this is still the case I cannot comment on.. with ICAT srv v4.8

HTH 

Jan 

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[Attila Heidrich]

Flowless!

$ asadmin list-applications
authn.simple-1.1.0  <ejb, webservices, web> 
icat.server-4.8.0   <ejb, webservices, web> 

ids.server-1.6.0    <ejb, webservices, web> 
Command list-applications executed successfully.

About the test:

requirements:

apt-get install python-pip
pip install requests

in our network I need http_proxy, so the followings are also necessary:
$ grep -i proxy /etc/environment
https_proxy=http://git:3128
http_proxy=http://git:3128
HTTPS_PROXY=http://git:3128
HTTP_PROXY=http://git:3128
no_proxy="localhost,.eli-alps.local"
NO_PROXY="$no_proxy"

$ bin/testicat https://localhost:8181 simple username root password root
...
/usr/local/lib/python2.7/dist-packages/requests/packages/urllib3/connectionpool.py:852: InsecureRequestWarning: Unverified HTTPS request is being made. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#ssl-warnings
  InsecureRequestWarning)
Login, search, create, delete and logout operations were all successful.


Attila

[jody...@stfc.ac.uk]

If you haven’t done so already you’re are going to set the deployment orders. Otherwise if you reboot Glassfish, things might not boot up in the correct order:

asadmin -t set applications.application.authn.simple-1.1.0.deployment-order=80
asadmin -t set applications.application.icat.server-4.8.0.deployment-order=100
asadmin -t set applications.application.ids.server-1.6.0.deployment-order=120

Are you going to install Topcat (a browser based user interface)?:

https://www.youtube.com/watch?v=UK1Vds5gBeY

[Steve Fisher]

The deployment ordering should have been configured by the setup script so these instructions should be unnecessary.

Steve

On 21 February 2017 at 12:51, <jody...@stfc.ac.uk> wrote:

If you haven’t done so already you’re are going to set the deployment orders. Otherwise if you reboot Glassfish, things might not boot up in the correct order:

asadmin -t set applications.application.authn.simple-1.1.0.deployment-order=80
asadmin -t set applications.application.icat.server-4.8.0.deployment-order=100
asadmin -t set applications.application.ids.server-1.6.0.deployment-order=120

Are you going to install Topcat (a browser based user interface)?:

https://www.youtube.com/watch?v=UK1Vds5gBeY

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[Attila Heidrich]

Thanks for the explanation. This is the first time I see glassfish (I have already worked with JBoss though), so I have a lot to learn.

Yes, I need topcat as well. We are all very green to ICAT, so I think this is going to be the first step using ICAT.

A

[Attila Heidrich]

I have "installed" topcat, just like the other components.

What should happen now? How can I access the WebUI, I can see on the screencast?

Doc tells, that default path is "/", but there's nothing on https://<myserver>:8181/
I can still access https://<myserver>:8181/icat/version f.e.

I have found this: topcatUrlRoot which can be set in topcat-setup.properties, but there's no default for this option, doesn't even exist in the example file.
Shall I set this?
On the other hand, if I change anything, and wish to redeploy the app, just edit the properties file, and run "setup install -v" again?

Attila

[jody...@stfc.ac.uk]

What do you see? Is it just the default Glassfish page?

If you go to:

https://<myserver>:8181/topcat/version

what do you get?

[Attila Heidrich]

Internal server error
-----------
exception

javax.servlet.ServletException: org.glassfish.jersey.server.ContainerException: java.lang.NoClassDefFoundError: Could not initialize class org.eclipse.persistence.jaxb.BeanValidationHelper
root cause

org.glassfish.jersey.server.ContainerException: java.lang.NoClassDefFoundError: Could not initialize class org.eclipse.persistence.jaxb.BeanValidationHelper
root cause

java.lang.NoClassDefFoundError: Could not initialize class org.eclipse.persistence.jaxb.BeanValidationHelper
-----------
Installation looked like this:
-----------
ubuntu@topcat:~/topcat$ ./setup install -v

execute: /home/ubuntu/glassfish4/bin/asadmin --port 4848 get property.administrative.domain.name
You are using Glassfish version 4

topcat.properties copied to /home/ubuntu/glassfish4/glassfish/domains/domain1/config

execute: /home/ubuntu/glassfish4/bin/asadmin --port 4848 delete-jdbc-resource jdbc/topcat

execute: /home/ubuntu/glassfish4/bin/asadmin --port 4848 delete-jdbc-connection-pool topcat

execute: /home/ubuntu/glassfish4/bin/asadmin --port 4848 delete-javamail-resource mail/topcat

execute: /home/ubuntu/glassfish4/bin/asadmin --port 4848 create-jdbc-connection-pool --datasourceclassname com.mysql.jdbc.jdbc2.optional.MysqlDataSource --property url=jdbc\\:mysql\\://localhost\\:3306/topcat:user=root:password=P@ssw0rd  --restype javax.sql.DataSource --failconnection=true --steadypoolsize 2 --maxpoolsize 32 --ping topcat
JDBC connection pool topcat created successfully.
Attempting to ping during JDBC Connection Pool Creation : topcat - Succeeded.
Command create-jdbc-connection-pool executed successfully.

execute: /home/ubuntu/glassfish4/bin/asadmin --port 4848 create-jdbc-resource --connectionpoolid topcat jdbc/topcat

topcat.json copied to unzipped/config

lang.json copied to unzipped/languages

topcat.css copied to unzipped/styles

Converted  topcat-2.2.0.war

execute: /home/ubuntu/glassfish4/bin/asadmin --port 4848 deploy --deploymentorder 140 topcat-2.2.0.war
-----------

A

[jody...@stfc.ac.uk]

We missed out a step.

We need to install a mysql connector:

cd path/to/your/glassfish/root/glassfish/domains/domain1/lib/ext
wget --quiet http://dev.mysql.com/get/Downloads/Connector-J/mysql-connector-java-5.1.37.zip
unzip -q mysql-connector-java-5.1.37.zip
rm mysql-connector-java-5.1.37.zip<http://dev.mysql.com/get/Downloads/Connector-J/mysql-connector-java-5.1.37.zip>

then:

asadmin restart-domain

[Attila Heidrich]

I didn't miss it:

ubuntu@topcat:~/glassfish4/glassfish/domains/domain1/lib/ext$ ls -ltr
total 968
-rw-r--r-- 1 ubuntu ubuntu 990927 Feb 21 12:21 mysql-connector-java-5.1.40-bin.jar

A

[Rolf Krahl]

Attila,

Am Mittwoch, 22. Februar 2017, 04:07:48 CET schrieb Attila Heidrich:
> I didn't miss it:
>
> ubuntu@topcat:~/glassfish4/glassfish/domains/domain1/lib/ext$ ls -ltr
> total 968
> -rw-r--r-- 1 ubuntu ubuntu 990927 Feb 21 12:21
> mysql-connector-java-5.1.40-bin.jar

Did you restart Glassfish after adding the mysql-connector jar to the
lib directory?

HTH,
Rolf

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Albert-Einstein-Str. 15, 12489 Berlin
Tel.: +49 30 8062 12122

[Attila Heidrich]

Yes, since I have added it at the very beginning, before deploying any icat component.

asadmin> list-jdbc-connection-pools
CLI031: Warning: Option "target" is obsolete and will be ignored.
CLI031: Warning: Option "target" is obsolete and will be ignored.
__TimerPool
DerbyPool
icat
topcat
Command list-jdbc-connection-pools executed successfully.
asadmin> ping-connection-pool icat
Command ping-connection-pool executed successfully.
asadmin> ping-connection-pool topcat
Command ping-connection-pool executed successfully.
asadmin>

[jody...@stfc.ac.uk]

What version of glassfish are you using?

[Attila Heidrich]

Latest one.

Version = GlassFish Server Open Source Edition  4.1.1  (build 1)

[jody...@stfc.ac.uk]

Hi Attilla,

Version 4.0 is the recommended version as 4.1.1 contains some (unresolved) bugs make it incompatible with Topcat:

https://java.net/jira/browse/GLASSFISH-21440

https://groups.google.com/forum/#!topic/icatgroup/6Pmscu1dsMw

I’ll update my documentation to make this clear.

So use version 4.0 - this is the version where all testing takes place on.

Jody

[jody...@stfc.ac.uk]

Here are the commands:

wget --quiet download.java.net/glassfish/4.0/release/glassfish-4.0.zip
unzip -q glassfish-4.0.zip

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[Attila Heidrich]

Succesfully downgraded in minutes thanks for my alpha version installation script :)

Much better now, <myserver>/topcat/version now returns
{"value":"2.2.0"}

[Attila Heidrich]

I can get the version info, but nothing else.

doc tells, <myserver>:8080/TOPCAT/Web.jsp should be available, but it isn't.

{"code":"NotFoundException","message":"HTTP 404 Not Found","status":404}

Maybe I didn't setup all configs properly.

A

[jody...@stfc.ac.uk]

Where did you find that document? That is a version 1.x reference.

No it should be:

https://<myserver>:8181/ for https i.e. you’ve set the secure option to true.

or

http://<myserver>:8080/ for http i.e. you’ve set the secure option to false.

Jody

wget --quiet download.java.net/glassfish/4.0/release/glassfish-4.0.zip<http://download.java.net/glassfish/4.0/release/glassfish-4.0.zip>
unzip -q glassfish-4.0.zip

[Attila Heidrich]

Google found it for me. :)

https://<myserver>:8181/ gives me nothing. Is there anything else I should setup besides installing topcat?

A

2017. február 24., péntek 10:45:12 UTC+1 időpontban Jody Salt a következőt írta:

Where did you find that document? That is a version 1.x reference.

No it should be:

https://<myserver>:8181/ for https i.e. you’ve set the secure option to true.

or

http://<myserver>:8080/ for http i.e. you’ve set the secure option to false.

Jody

On 24 Feb 2017, at 08:50, Attila Heidrich <attila....@gmail.com<mailto:attila....@gmail.com>> wrote:

I can get the version info, but nothing else.

doc tells, <myserver>:8080/TOPCAT/Web.jsp should be available, but it isn't.

{"code":"NotFoundException","message":"HTTP 404 Not Found","status":404}

Maybe I didn't setup all configs properly.

A

2017. február 23., csütörtök 9:34:40 UTC+1 időpontban Attila Heidrich a következőt írta:
Succesfully downgraded in minutes thanks for my alpha version installation script :)

Much better now, <myserver>/topcat/version now returns
{"value":"2.2.0"}

2017. február 23., csütörtök 9:10:18 UTC+1 időpontban Jody Salt a következőt írta:
Here are the commands:

wget --quiet download.java.net/glassfish/4.0/release/glassfish-4.0.zip<http://download.java.net/glassfish/4.0/release/glassfish-4.0.zip>
unzip -q glassfish-4.0.zip


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[jody...@stfc.ac.uk]

When you say “nothing”, is this a 404 page, a white screen or just no connection?

On 27 Feb 2017, at 09:57, Attila Heidrich <attila....@gmail.com<mailto:attila....@gmail.com>> wrote:

Google found it for me. :)

https://<myserver>:8181/ gives me nothing. Is there anything else I should setup besides installing topcat?

A

2017. február 24., péntek 10:45:12 UTC+1 időpontban Jody Salt a következőt írta:
Where did you find that document? That is a version 1.x reference.

No it should be:

https://<myserver>:8181/ for https i.e. you’ve set the secure option to true.

or

http://<myserver>:8080/ for http i.e. you’ve set the secure option to false.

Jody

On 24 Feb 2017, at 08:50, Attila Heidrich <attila....@gmail.com<javascript:><mailto:attila....@gmail.com<javascript:>>> wrote:

I can get the version info, but nothing else.

doc tells, <myserver>:8080/TOPCAT/Web.jsp should be available, but it isn't.

{"code":"NotFoundException","message":"HTTP 404 Not Found","status":404}

Maybe I didn't setup all configs properly.

A

2017. február 23., csütörtök 9:34:40 UTC+1 időpontban Attila Heidrich a következőt írta:
Succesfully downgraded in minutes thanks for my alpha version installation script :)

Much better now, <myserver>/topcat/version now returns
{"value":"2.2.0"}

2017. február 23., csütörtök 9:10:18 UTC+1 időpontban Jody Salt a következőt írta:
Here are the commands:

wget --quiet download.java.net/glassfish/4.0/release/glassfish-4.0.zip<http://download.java.net/glassfish/4.0/release/glassfish-4.0.zip><http://download.java.net/glassfish/4.0/release/glassfish-4.0.zip>

unzip -q glassfish-4.0.zip


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[Attila Heidrich]

empty page, no error, no content. (actually there are a few page elements transferred, but nothing to be rendered by the browser)


A

[jody...@stfc.ac.uk]

Have you configured topcat.json yet?

If you go into developer mode can you see any javascript/network errors?

In topcat.json you need to specify the locations of your ICAT and IDS servers. You will also need to a have a facility entity added to your ICAT, and then you need to add this name to topcat.json.

I have a little ruby script for creating “Lorum Ipsum Light Source”:

https://github.com/icatproject/topcat/blob/master/tools/lorum_facility_generator.rb

This creates a dummy facility using the REST API.

You’ll need to update the paths and authentication, and you’ll need to install the dependencies:

gem install faker rest-client json

then you can run the script:

ruby lorum_facility_generator.rb

the facility name will be “LILS”.

With a bit of tweaking the following topcat.json should work:

Let me know how you get on.

Jody

[Attila Heidrich]

2017. február 27., hétfő 18:23:47 UTC+1 időpontban Jody Salt a következőt írta:

Have you configured topcat.json yet?

I have used the default with updated URLs.
 

If you go into developer mode can you see any javascript/network errors?

No.
 

In topcat.json you need to specify the locations of your ICAT and IDS servers. You will also need to a have a facility entity added to your ICAT, and then you need to add this name to topcat.json.

I have a little ruby script for creating “Lorum Ipsum Light Source”:

Install ruby just for generate a json is kinda strange for me, I would like to avoid this, if possible.

I have tried the attached json, and now I do have an error message:

site > pages > 0 > name: unexpected attribute

This is site[pages][0]:

        "pages" : [
            {
                "name" : "about",
                "addToNavBar": {
                    "label" : "About",
                    "align" : "left"
                }

            },


Attila
 

[jody...@stfc.ac.uk]

Hi Attila,

I’ve attached an updated version of the topcat.json.

The ruby script has nothing to do with JSON, it creates a fake facility in your Icat with some dummy metadata data. So it basically does a fake ingestion.

The absolute minimum you need in your Icat for Topcat to work is a “Facility” entity. To see the complete structure of an Icat have a look at the following:

https://repo.icatproject.org/site/icat/server/4.8.0/schema.html

If you don’t want to use the ruby script, we can create a minimal facility by talking to the REST API (https://repo.icatproject.org/site/icat/server/4.8.0/miredot/index.html) using curl:

(first login and create a sessionId)

curl -k --data 'json={"plugin": "simple", "credentials":[{"username": "root"}, {"password": "root"}]}' https://localhost:8181/icat/session

(next create a facility called “LILS")

curl -k --data ‘sessionId=your-sessionId&entities=[{"Facility": {"name": “LILS"}}]' https://localhost:8181/icat/entityManager

The ruby script basically does the same as above but also creates some fake data.

[Attila Heidrich]

Still there are a few error messages:

- unexpected attribute in topcat.json: templateTranslateName
- "class javax.ejb.EJBTransactionRolledbackException null" after login

Home menu displays a few things I have never seen before, it looks like I'm finally logged in. But upper right corner still shows "login", so I may be still logged out.

My data,  search, and browser tabs are visible, will finally find out how to use them, but still not perfectly sure, that it is working as expected.

Attila

[jody...@stfc.ac.uk]

Hi Attila,

I made a mistake (I’m working several of Topcat at the same time), simply remove all references to ‘templateTranslateName’ in topcat.json, then run ./setup install again.

'Home menu displays a few things I have never seen before, it looks like I'm finally logged in. But upper right corner still shows "login”'

That’s a new one :-). Can you send me a screenshot so I can see?

Jody

[Attila Heidrich]

OK, no problem, it didn' bother me much anyway :)

Screenshots are here: https://goo.gl/photos/VwMsDsxLq8qk9Kiu5

1st one: I login as root, the error message appeares, but still, after this "login action" I can use the Home menu.

2nd shows what I see in "Home" (upper right still show "login" - so I guess I am not logged in)

Attila

[jody...@stfc.ac.uk]

After trying to login, go your browser’s console (in dev tools) and type the following:

tc.icat('LILS').session()

And let me know what you get.

Jody

[Attila Heidrich]

I have attached a screenshot. Logs in console shows traces of a page refresh (F5), and the js command you asked for.

Attila

[jody...@stfc.ac.uk]

Well good news - you’ve managed to authenticate successfully and are logged in!

Could you can now click on a user/cart/LILS and a user/downloads error and show me the request and response.

Jody

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<Képernyőkép erről: 2017-03-03 12-59-56.png>

[jody...@stfc.ac.uk]

Meant to say:

"Could you now"

On 3 Mar 2017, at 12:46, jody...@stfc.ac.uk<mailto:jody...@stfc.ac.uk> wrote:

Well good news - you’ve managed to authenticate successfully and are logged in!

Could you can now click on a user/cart/LILS and a user/downloads error and show me the request and response.

Jody

On 3 Mar 2017, at 12:02, Attila Heidrich <attila....@gmail.com<mailto:attila....@gmail.com><mailto:attila....@gmail.com>> wrote:

I have attached a screenshot. Logs in console shows traces of a page refresh (F5), and the js command you asked for.

Attila


2017. március 2., csütörtök 17:57:07 UTC+1 időpontban Jody Salt a következőt írta:
After trying to login, go your browser’s console (in dev tools) and type the following:

tc.icat('LILS').session()

And let me know what you get.



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[Attila Heidrich]

Error messages in detail:

GET https://10.3.1.52:8181/topcat/user/downloads?icatUrl=https:%2F%2F10.3.1.52:…d.facilityName%20%3D%20%27LILS%27%20AND%20download.isDeleted%20%3D%20false 500 (Internal Server Error)
(anonymous) @ vendor.86a0ca90.js:21117
sendReq @ vendor.86a0ca90.js:20910
serverRequest @ vendor.86a0ca90.js:20620
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
bootstrapApply @ vendor.86a0ca90.js:12031
invoke @ vendor.86a0ca90.js:14875
doBootstrap @ vendor.86a0ca90.js:12029
bootstrap @ vendor.86a0ca90.js:12049
(anonymous) @ vendor.86a0ca90.js:56531
fire @ vendor.86a0ca90.js:3148
add @ vendor.86a0ca90.js:3194
jQuery.fn.ready @ vendor.86a0ca90.js:3428
doBootstrap @ vendor.86a0ca90.js:56530
handleResults @ vendor.86a0ca90.js:56587
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
done @ vendor.86a0ca90.js:20941
completeRequest @ vendor.86a0ca90.js:21139
requestLoaded @ vendor.86a0ca90.js:21080
vendor.86a0ca90.js:21117 GET https://10.3.1.52:8181/topcat/user/downloads?icatUrl=https:%2F%2F10.3.1.52:…d.facilityName%20%3D%20%27LILS%27%20AND%20download.isDeleted%20%3D%20false 500 (Internal Server Error)
(anonymous) @ vendor.86a0ca90.js:21117
sendReq @ vendor.86a0ca90.js:20910
serverRequest @ vendor.86a0ca90.js:20620
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
bootstrapApply @ vendor.86a0ca90.js:12031
invoke @ vendor.86a0ca90.js:14875
doBootstrap @ vendor.86a0ca90.js:12029
bootstrap @ vendor.86a0ca90.js:12049
(anonymous) @ vendor.86a0ca90.js:56531
fire @ vendor.86a0ca90.js:3148
add @ vendor.86a0ca90.js:3194
jQuery.fn.ready @ vendor.86a0ca90.js:3428
doBootstrap @ vendor.86a0ca90.js:56530
handleResults @ vendor.86a0ca90.js:56587
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
done @ vendor.86a0ca90.js:20941
completeRequest @ vendor.86a0ca90.js:21139
requestLoaded @ vendor.86a0ca90.js:21080
vendor.86a0ca90.js:21117 GET https://10.3.1.52:8181/topcat/user/cart/LILS?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585 500 (Internal Server Error)
(anonymous) @ vendor.86a0ca90.js:21117
sendReq @ vendor.86a0ca90.js:20910
serverRequest @ vendor.86a0ca90.js:20620
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
bootstrapApply @ vendor.86a0ca90.js:12031
invoke @ vendor.86a0ca90.js:14875
doBootstrap @ vendor.86a0ca90.js:12029
bootstrap @ vendor.86a0ca90.js:12049
(anonymous) @ vendor.86a0ca90.js:56531
fire @ vendor.86a0ca90.js:3148
add @ vendor.86a0ca90.js:3194
jQuery.fn.ready @ vendor.86a0ca90.js:3428
doBootstrap @ vendor.86a0ca90.js:56530
handleResults @ vendor.86a0ca90.js:56587
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
done @ vendor.86a0ca90.js:20941
completeRequest @ vendor.86a0ca90.js:21139
requestLoaded @ vendor.86a0ca90.js:21080
vendor.86a0ca90.js:21117 GET https://10.3.1.52:8181/topcat/user/cart/LILS?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585 500 (Internal Server Error)
(anonymous) @ vendor.86a0ca90.js:21117
sendReq @ vendor.86a0ca90.js:20910
serverRequest @ vendor.86a0ca90.js:20620
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
done @ vendor.86a0ca90.js:20941
completeRequest @ vendor.86a0ca90.js:21139
requestLoaded @ vendor.86a0ca90.js:21080
vendor.86a0ca90.js:21117 GET https://10.3.1.52:8181/topcat/user/cart/LILS?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585 500 (Internal Server Error)
(anonymous) @ vendor.86a0ca90.js:21117
sendReq @ vendor.86a0ca90.js:20910
serverRequest @ vendor.86a0ca90.js:20620
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
done @ vendor.86a0ca90.js:20941
completeRequest @ vendor.86a0ca90.js:21139
requestLoaded @ vendor.86a0ca90.js:21080
vendor.86a0ca90.js:21117 GET https://10.3.1.52:8181/topcat/user/cart/LILS?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585 500 (Internal Server Error)
(anonymous) @ vendor.86a0ca90.js:21117
sendReq @ vendor.86a0ca90.js:20910
serverRequest @ vendor.86a0ca90.js:20620
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
(anonymous) @ vendor.86a0ca90.js:28279
completeOutstandingRequest @ vendor.86a0ca90.js:15904
(anonymous) @ vendor.86a0ca90.js:16181
vendor.86a0ca90.js:21117 GET https://10.3.1.52:8181/topcat/user/cart/LILS?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585 500 (Internal Server Error)
(anonymous) @ vendor.86a0ca90.js:21117
sendReq @ vendor.86a0ca90.js:20910
serverRequest @ vendor.86a0ca90.js:20620
processQueue @ vendor.86a0ca90.js:25144
(anonymous) @ vendor.86a0ca90.js:25160
$eval @ vendor.86a0ca90.js:26404
$digest @ vendor.86a0ca90.js:26222
$apply @ vendor.86a0ca90.js:26512
done @ vendor.86a0ca90.js:20941
completeRequest @ vendor.86a0ca90.js:21139
requestLoaded @ vendor.86a0ca90.js:21080


Anyway, I have finally noticed, that just after the login, the upper right corner still displays "login" as if I were logged out. Refresh on the page helps, from that moment it displays "logout (simple/root)"

Attila

[jody...@stfc.ac.uk]

Not quite what I wanted. :-)

Can you send me the errors in the Network tab (you should see them in red with a 500 error). Basically I want to know what Topcat send to the server and what the response was. What you sent me below is the javascript response to the error - so not the root cause.

[Attila Heidrich]

I see now! :)


The conversation parts in the order of appearance:

Request URL:https://10.3.1.52:8181/topcat/user/cart/LILS?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585
Request Headers
Provisional headers are shown
Accept:application/json, text/plain, */*
Referer:https://10.3.1.52:8181/
User-Agent:Mozilla/5.0 (Linux; Android 6.0; Nexus 5 Build/MRA58N) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/56.0.2924.87 Mobile Safari/537.36
Query String Parameters
view source
view URL encoded
icatUrl:https://10.3.1.52:8181
sessionId:90550ccf-ae94-4888-9a76-ec6ae6fa9585

Request URL:https://10.3.1.52:8181/topcat/user/downloads?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585&queryOffset=where%20download.facilityName%20%3D%20%27LILS%27%20AND%20download.isDeleted%20%3D%20false
Request Method:GET
Status Code:500 Internal Server Error
Remote Address:10.3.1.52:8181
Response Headers
view source
Access-Control-Allow-Headers:origin, content-type, accept, authorization
Access-Control-Allow-Methods:GET, POST, PUT, DELETE, OPTIONS, HEAD
Access-Control-Allow-Origin:*
Cache-Control:no-cache, no-store, must-revalidate
Connection:close
Content-Length:108
Content-Type:application/json
Date:Fri, 03 Mar 2017 14:13:56 GMT
Expires:Thu, 01 Jan 1970 00:00:00 GMT
Pragma:no-cache
Server:GlassFish Server Open Source Edition  4.0
X-Powered-By:Servlet/3.1 JSP/2.3 (GlassFish Server Open Source Edition  4.0  Java/Oracle Corporation/1.8)
Request Headers
view source
Accept:application/json, text/plain, */*
Accept-Encoding:gzip, deflate, sdch, br
Accept-Language:hu-HU,hu;q=0.8,en-US;q=0.6,en;q=0.4
Connection:keep-alive
Cookie:hideCookieMessage=true; JSESSIONID=e0fb82108a763715d3f0275c216f
Host:10.3.1.52:8181
Referer:https://10.3.1.52:8181/
User-Agent:Mozilla/5.0 (Linux; Android 6.0; Nexus 5 Build/MRA58N) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/56.0.2924.87 Mobile Safari/537.36
Query String Parameters
view source
view URL encoded
icatUrl:https://10.3.1.52:8181
sessionId:90550ccf-ae94-4888-9a76-ec6ae6fa9585
queryOffset:where download.facilityName = 'LILS' AND download.isDeleted = false

Request URL:https://10.3.1.52:8181/topcat/user/cart/LILS?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585
Request Method:GET
Status Code:500 Internal Server Error
Remote Address:10.3.1.52:8181
Response Headers
view source
Access-Control-Allow-Headers:origin, content-type, accept, authorization
Access-Control-Allow-Methods:GET, POST, PUT, DELETE, OPTIONS, HEAD
Access-Control-Allow-Origin:*
Cache-Control:no-cache, no-store, must-revalidate
Connection:close
Content-Length:108
Content-Type:application/json
Date:Fri, 03 Mar 2017 14:13:56 GMT
Expires:Thu, 01 Jan 1970 00:00:00 GMT
Pragma:no-cache
Server:GlassFish Server Open Source Edition  4.0
X-Powered-By:Servlet/3.1 JSP/2.3 (GlassFish Server Open Source Edition  4.0  Java/Oracle Corporation/1.8)
Request Headers
view source
Accept:application/json, text/plain, */*
Accept-Encoding:gzip, deflate, sdch, br
Accept-Language:hu-HU,hu;q=0.8,en-US;q=0.6,en;q=0.4
Connection:keep-alive
Cookie:hideCookieMessage=true; JSESSIONID=e0fb82108a763715d3f0275c216f
Host:10.3.1.52:8181
Referer:https://10.3.1.52:8181/
User-Agent:Mozilla/5.0 (Linux; Android 6.0; Nexus 5 Build/MRA58N) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/56.0.2924.87 Mobile Safari/537.36
Query String Parameters
view source
view URL encoded
icatUrl:https://10.3.1.52:8181
sessionId:90550ccf-ae94-4888-9a76-ec6ae6fa9585

Request URL:https://10.3.1.52:8181/topcat/user/downloads?icatUrl=https:%2F%2F10.3.1.52:8181&sessionId=90550ccf-ae94-4888-9a76-ec6ae6fa9585&queryOffset=where%20download.facilityName%20%3D%20%27LILS%27%20AND%20download.isDeleted%20%3D%20false
Request Method:GET
Status Code:500 Internal Server Error
Remote Address:10.3.1.52:8181
Response Headers
view source
Access-Control-Allow-Headers:origin, content-type, accept, authorization
Access-Control-Allow-Methods:GET, POST, PUT, DELETE, OPTIONS, HEAD
Access-Control-Allow-Origin:*
Cache-Control:no-cache, no-store, must-revalidate
Connection:close
Content-Length:108
Content-Type:application/json
Date:Fri, 03 Mar 2017 14:13:56 GMT
Expires:Thu, 01 Jan 1970 00:00:00 GMT
Pragma:no-cache
Server:GlassFish Server Open Source Edition  4.0
X-Powered-By:Servlet/3.1 JSP/2.3 (GlassFish Server Open Source Edition  4.0  Java/Oracle Corporation/1.8)
Request Headers
view source
Accept:application/json, text/plain, */*
Accept-Encoding:gzip, deflate, sdch, br
Accept-Language:hu-HU,hu;q=0.8,en-US;q=0.6,en;q=0.4
Connection:keep-alive
Cookie:hideCookieMessage=true; JSESSIONID=e0fb82108a763715d3f0275c216f
Host:10.3.1.52:8181
Referer:https://10.3.1.52:8181/
User-Agent:Mozilla/5.0 (Linux; Android 6.0; Nexus 5 Build/MRA58N) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/56.0.2924.87 Mobile Safari/537.36
Query String Parameters
view source
view URL encoded
icatUrl:https://10.3.1.52:8181
sessionId:90550ccf-ae94-4888-9a76-ec6ae6fa9585
queryOffset:where download.facilityName = 'LILS' AND download.isDeleted = false

There are a few more, I hope it will be enough!

Attila

[jody...@stfc.ac.uk]

Nearly there (you’ve sent me the request and response headers) - I just need the response body which appears in a sub-tab under network, hopefully this should give us more insight.

[jody...@stfc.ac.uk]

[cid:207DBEA1-9A3B-412B...@esc.rl.ac.uk]

On 3 Mar 2017, at 14:34, jody...@stfc.ac.uk<mailto:jody...@stfc.ac.uk> wrote:

Nearly there (you’ve sent me the request and response headers) - I just need the response body which appears in a sub-tab under network, hopefully this should give us more insight.

To unsubscribe from this group and stop receiving emails from it, send an email to icatgroup+...@googlegroups.com<mailto:icatgroup+...@googlegroups.com><mailto:icatgroup+...@googlegroups.com>.
To post to this group, send email to icat...@googlegroups.com<mailto:icat...@googlegroups.com><mailto:icat...@googlegroups.com>.

[Attila Heidrich]

:)

For the same four, I have already sent the Headers:

no response
{"code":"InternalException","message":"class javax.ejb.EJBTransactionRolledbackException null","status":500}
... and 2 more times the same.

The same for all "500" statuses.

The same message appears at login time as well.

Attila

[jody...@stfc.ac.uk]

That is pretty generic error.

Ok, can you send me your server.log:

root/to/your/glassfish4/glassfish/domains/domain1/logs/server.log

Jody

[Attila Heidrich]

Long version follows:

[2017-03-07T08:11:59.974+0000] [glassfish 4.0] [WARNING] [ejb.system_exception] [javax.enterprise.system.container.ejb.com.sun.ejb.containers] [tid: _ThreadID=3856 _ThreadName=http-listener-2(17)] [timeMillis: 1488874319974] [levelValue: 900] [[

  EJB5184:A system exception occurred during an invocation on EJB AdminResource, method: public javax.ws.rs.core.Response org.icatproject.topcat.web.rest.AdminResource.isValidSession(java.lang.String,java.lang.String) throws java.net.MalformedURLException,org.icatproject.topcat.exceptions.TopcatException]]

[2017-03-07T08:11:59.974+0000] [glassfish 4.0] [WARNING] [] [javax.enterprise.system.container.ejb.com.sun.ejb.containers] [tid: _ThreadID=3856 _ThreadName=http-listener-2(17)] [timeMillis: 1488874319974] [levelValue: 900] [[

  

javax.ejb.EJBTransactionRolledbackException

at com.sun.ejb.containers.BaseContainer.mapLocal3xException(BaseContainer.java:2279)

at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2060)

at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:1979)

at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)

at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)

at com.sun.proxy.$Proxy574.isAdmin(Unknown Source)

at org.icatproject.topcat.icatclient.__EJB31_Generated__ICATClientBean__Intf____Bean__.isAdmin(Unknown Source)

at org.icatproject.topcat.web.rest.AdminResource.isValidSession(AdminResource.java:77)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:498)

at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)

at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)

at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4695)

at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:630)

at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)

at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:582)

at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)

at sun.reflect.GeneratedMethodAccessor807.invoke(Unknown Source)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:498)

at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)

at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)

at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:582)

at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)

at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)

at sun.reflect.GeneratedMethodAccessor808.invoke(Unknown Source)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:498)

at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)

at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)

at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)

at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4667)

at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4655)

at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)

at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:88)

at com.sun.proxy.$Proxy575.isValidSession(Unknown Source)

at org.icatproject.topcat.web.rest.__EJB31_Generated__AdminResource__Intf____Bean__.isValidSession(Unknown Source)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:498)

at org.glassfish.jersey.server.model.internal.ResourceMethodInvocationHandlerFactory$1.invoke(ResourceMethodInvocationHandlerFactory.java:81)

at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.invoke(AbstractJavaResourceMethodDispatcher.java:125)

at org.glassfish.jersey.server.model.internal.JavaResourceMethodDispatcherProvider$ResponseOutInvoker.doDispatch(JavaResourceMethodDispatcherProvider.java:152)

at org.glassfish.jersey.server.model.internal.AbstractJavaResourceMethodDispatcher.dispatch(AbstractJavaResourceMethodDispatcher.java:91)

at org.glassfish.jersey.server.model.ResourceMethodInvoker.invoke(ResourceMethodInvoker.java:346)

at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:341)

at org.glassfish.jersey.server.model.ResourceMethodInvoker.apply(ResourceMethodInvoker.java:101)

at org.glassfish.jersey.server.ServerRuntime$1.run(ServerRuntime.java:224)

at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271)

at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267)

at org.glassfish.jersey.internal.Errors.process(Errors.java:315)

at org.glassfish.jersey.internal.Errors.process(Errors.java:297)

at org.glassfish.jersey.internal.Errors.process(Errors.java:267)

at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:317)

at org.glassfish.jersey.server.ServerRuntime.process(ServerRuntime.java:198)

at org.glassfish.jersey.server.ApplicationHandler.handle(ApplicationHandler.java:946)

at org.glassfish.jersey.servlet.WebComponent.service(WebComponent.java:323)

at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:372)

at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:335)

at org.glassfish.jersey.servlet.ServletContainer.service(ServletContainer.java:218)

at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1682)

at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:344)

at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)

at org.icatproject.topcat.filter.CacheControlFilter.doFilter(CacheControlFilter.java:52)

at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:256)

at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:214)

at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:316)

at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:160)

at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)

at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)

at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)

at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:174)

at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:734)

at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:673)

at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:354)

at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:260)

at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:246)

at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:191)

at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:168)

at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:189)

at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:119)

at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:288)

at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:206)

at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:136)

at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:114)

at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:77)

at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:838)

at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:113)

at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:115)

at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:55)

at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:135)

at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:564)

at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:544)

at java.lang.Thread.run(Thread.java:745)

Caused by: javax.ejb.TransactionRolledbackLocalException: Exception thrown from bean

at com.sun.ejb.containers.EJBContainerTransactionManager.checkExceptionClientTx(EJBContainerTransactionManager.java:662)

at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:507)

at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4475)

at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2009)

... 95 more

Caused by: javax.xml.ws.WebServiceException: Failed to access the WSDL at: https://10.3.1.52:8181/ICATService/ICAT?wsdl. It failed with: 

java.security.cert.CertificateException: No subject alternative names present.

at com.sun.xml.ws.wsdl.parser.RuntimeWSDLParser.tryWithMex(RuntimeWSDLParser.java:249)

at com.sun.xml.ws.wsdl.parser.RuntimeWSDLParser.parse(RuntimeWSDLParser.java:230)

at com.sun.xml.ws.wsdl.parser.RuntimeWSDLParser.parse(RuntimeWSDLParser.java:193)

at com.sun.xml.ws.wsdl.parser.RuntimeWSDLParser.parse(RuntimeWSDLParser.java:162)

at com.sun.xml.ws.client.WSServiceDelegate.parseWSDL(WSServiceDelegate.java:359)

at com.sun.xml.ws.client.WSServiceDelegate.<init>(WSServiceDelegate.java:321)

at com.sun.xml.ws.client.WSServiceDelegate.<init>(WSServiceDelegate.java:230)

at com.sun.xml.ws.client.WSServiceDelegate.<init>(WSServiceDelegate.java:212)

at com.sun.xml.ws.client.WSServiceDelegate.<init>(WSServiceDelegate.java:208)

at com.sun.xml.ws.spi.ProviderImpl.createServiceDelegate(ProviderImpl.java:112)

at javax.xml.ws.Service.<init>(Service.java:92)

at org.icatproject_4_5_0.ICATService.<init>(ICATService.java:58)

at org.icatproject.topcat.icatclient.ICATClient45.<init>(ICATClient45.java:54)

at org.icatproject.topcat.icatclient.ICATClientFactory.createICATClient(ICATClientFactory.java:17)

at org.icatproject.topcat.icatclient.ICATClientBean.getIcatService(ICATClientBean.java:137)

at org.icatproject.topcat.icatclient.ICATClientBean.isAdmin(ICATClientBean.java:62)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:498)

at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:1081)

at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:1153)

at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4695)

at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:630)

at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)

at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:582)

at org.jboss.weld.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:46)

at sun.reflect.GeneratedMethodAccessor807.invoke(Unknown Source)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:498)

at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)

at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)

at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:582)

at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)

at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)

at sun.reflect.GeneratedMethodAccessor808.invoke(Unknown Source)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:498)

at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:883)

at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:822)

at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:369)

at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4667)

at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4655)

at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)

... 93 more

Caused by: javax.net.ssl.SSLHandshakeException: java.security.cert.CertificateException: No subject alternative names present

at sun.security.ssl.Alerts.getSSLException(Alerts.java:192)

at sun.security.ssl.SSLSocketImpl.fatal(SSLSocketImpl.java:1949)

at sun.security.ssl.Handshaker.fatalSE(Handshaker.java:302)

at sun.security.ssl.Handshaker.fatalSE(Handshaker.java:296)

at sun.security.ssl.ClientHandshaker.serverCertificate(ClientHandshaker.java:1514)

at sun.security.ssl.ClientHandshaker.processMessage(ClientHandshaker.java:216)

at sun.security.ssl.Handshaker.processLoop(Handshaker.java:1026)

at sun.security.ssl.Handshaker.process_record(Handshaker.java:961)

at sun.security.ssl.SSLSocketImpl.readRecord(SSLSocketImpl.java:1062)

at sun.security.ssl.SSLSocketImpl.performInitialHandshake(SSLSocketImpl.java:1375)

at sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:1403)

at sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:1387)

at sun.net.www.protocol.https.HttpsClient.afterConnect(HttpsClient.java:559)

at sun.net.www.protocol.https.AbstractDelegateHttpsURLConnection.connect(AbstractDelegateHttpsURLConnection.java:185)

at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1546)

at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1474)

at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:254)

at java.net.URL.openStream(URL.java:1045)

at com.sun.xml.ws.wsdl.parser.RuntimeWSDLParser.createReader(RuntimeWSDLParser.java:983)

at com.sun.xml.ws.wsdl.parser.RuntimeWSDLParser.resolveWSDL(RuntimeWSDLParser.java:384)

at com.sun.xml.ws.wsdl.parser.RuntimeWSDLParser.parse(RuntimeWSDLParser.java:215)

... 135 more

Caused by: java.security.cert.CertificateException: No subject alternative names present

at sun.security.util.HostnameChecker.matchIP(HostnameChecker.java:144)

at sun.security.util.HostnameChecker.match(HostnameChecker.java:93)

at sun.security.ssl.X509TrustManagerImpl.checkIdentity(X509TrustManagerImpl.java:455)

at sun.security.ssl.X509TrustManagerImpl.checkIdentity(X509TrustManagerImpl.java:436)

at sun.security.ssl.X509TrustManagerImpl.checkTrusted(X509TrustManagerImpl.java:200)

at sun.security.ssl.X509TrustManagerImpl.checkServerTrusted(X509TrustManagerImpl.java:124)

at sun.security.ssl.ClientHandshaker.serverCertificate(ClientHandshaker.java:1496)

... 151 more

]]

[jody...@stfc.ac.uk]

It would suggest to me that you don’t have a valid ssl certificate installed.

As a quick test you can turn off https by going into each component’s <component name>-setup.properties file and setting 'secure=false’, you will also need to change any references from https://<server name>:8181/ to http://<server name>:8080 and then run ./setup install for each component.

Jody

[Attila Heidrich]

I did, but I lost topcat.

http://myserver:8080/icat/version works, also http://myserver:8080/topcat/version, but http://myserver:8080/ returns a default server installed page. (Your server is now running)

I cannot find more https refs to modify in the install dirs:

ubuntu@topcat:~$ egrep 'https://(local|10)' -r authn.simple icat.server ids.server ids.storage_file topcat
Binary file topcat/topcat-2.2.0.war matches
ubuntu@topcat:~$ egrep 'http://(local|10)' -r authn.simple icat.server ids.server ids.storage_file topcat
ids.server/ids.properties:icat.url = http://localhost:8080
topcat/topcat.json:        "topcatUrl": "http://10.3.1.52:8080",
topcat/topcat.json:            "idsUrl": "http://10.3.1.52:8080",
topcat/topcat.json:            "icatUrl": "http://10.3.1.52:8080",
topcat/topcat.json:                    "idsUrl": "http://10.3.1.52:8080"
topcat/topcat.json:                    "idsUrl": "http://10.3.1.52:8080"
Binary file topcat/topcat-2.2.0.war matches

I have also ran the 'setup install -v's for all components.

Attila

[Attila Heidrich]

ubuntu@topcat:~$ egrep 'secure.*=' -r authn.simple icat.server ids.server ids.storage_file topcat |grep properties|grep -v example
authn.simple/authn_simple-setup.properties:secure         = false
authn.simple/authn_simple-setup.properties:!secure         = false
icat.server/icat-setup.properties:secure         = false
icat.server/icat-setup.properties:!secure         = false
ids.server/ids-setup.properties:secure         = false
ids.storage_file/ids.storage_file-setup.properties:secure = false
topcat/topcat-setup.properties:secure         = false

[jody...@stfc.ac.uk]

It might be to with the order they where reset in.

Have you tried restarting glassfish?:

asadmin stop-domain
asadmin start-domain

Jody

On 7 Mar 2017, at 08:14, Attila Heidrich <attila....@gmail.com<javascript:><mailto:attila....@gmail.com<javascript:>>> wrote:

java.security.cert.CertificateException: No subject alternative names present.

[Attila Heidrich]

yes, but not with asadmin.
restarted the service, and later the machine also.

no change

ubuntu@topcat:~$ asadmin list "*"|grep http
configs.config.default-config.http-service
configs.config.default-config.http-service.access-log
configs.config.default-config.http-service.virtual-server.__asadmin
configs.config.default-config.http-service.virtual-server.server
configs.config.default-config.http-service.virtual-server.server.property.default-web-xml
configs.config.default-config.network-config.network-listeners.network-listener.http-listener-1
configs.config.default-config.network-config.network-listeners.network-listener.http-listener-2
configs.config.default-config.network-config.protocols.protocol.admin-http-redirect
configs.config.default-config.network-config.protocols.protocol.admin-http-redirect.http-redirect
configs.config.default-config.network-config.protocols.protocol.admin-listener.http
configs.config.default-config.network-config.protocols.protocol.admin-listener.http.file-cache
configs.config.default-config.network-config.protocols.protocol.http-listener-1
configs.config.default-config.network-config.protocols.protocol.http-listener-1.http
configs.config.default-config.network-config.protocols.protocol.http-listener-1.http.file-cache
configs.config.default-config.network-config.protocols.protocol.http-listener-2
configs.config.default-config.network-config.protocols.protocol.http-listener-2.http
configs.config.default-config.network-config.protocols.protocol.http-listener-2.http.file-cache
configs.config.default-config.network-config.protocols.protocol.http-listener-2.ssl
configs.config.default-config.network-config.protocols.protocol.pu-protocol.port-unification.protocol-finder.admin-http-redirect
configs.config.default-config.network-config.protocols.protocol.pu-protocol.port-unification.protocol-finder.http-finder
configs.config.default-config.network-config.protocols.protocol.sec-admin-listener.http
configs.config.default-config.network-config.protocols.protocol.sec-admin-listener.http.file-cache
configs.config.default-config.thread-pools.thread-pool.http-thread-pool
configs.config.server-config.http-service
configs.config.server-config.http-service.access-log
configs.config.server-config.http-service.virtual-server.__asadmin
configs.config.server-config.http-service.virtual-server.server
configs.config.server-config.network-config.network-listeners.network-listener.http-listener-1
configs.config.server-config.network-config.network-listeners.network-listener.http-listener-2
configs.config.server-config.network-config.protocols.protocol.admin-http-redirect
configs.config.server-config.network-config.protocols.protocol.admin-http-redirect.http-redirect
configs.config.server-config.network-config.protocols.protocol.admin-listener.http
configs.config.server-config.network-config.protocols.protocol.admin-listener.http.file-cache
configs.config.server-config.network-config.protocols.protocol.http-listener-1
configs.config.server-config.network-config.protocols.protocol.http-listener-1.http
configs.config.server-config.network-config.protocols.protocol.http-listener-1.http.file-cache
configs.config.server-config.network-config.protocols.protocol.http-listener-2
configs.config.server-config.network-config.protocols.protocol.http-listener-2.http
configs.config.server-config.network-config.protocols.protocol.http-listener-2.http.file-cache
configs.config.server-config.network-config.protocols.protocol.http-listener-2.ssl
configs.config.server-config.network-config.protocols.protocol.pu-protocol.port-unification.protocol-finder.admin-http-redirect
configs.config.server-config.network-config.protocols.protocol.pu-protocol.port-unification.protocol-finder.http-finder
configs.config.server-config.network-config.protocols.protocol.sec-admin-listener.http
configs.config.server-config.network-config.protocols.protocol.sec-admin-listener.http.file-cache
configs.config.server-config.thread-pools.thread-pool.http-thread-pool

Attila

[jody...@stfc.ac.uk]

if you run

asadmin list-applications

does Topcat appear in the list?

On 7 Mar 2017, at 10:17, Attila Heidrich <attila....@gmail.com<javascript:><mailto:attila....@gmail.com<javascript:>>> wrote:

I did, but I lost topcat.

http://myserver:8080/icat/version works, also http://myserver:8080/topcat/version, but http://myserver:8080/ returns a default server installed page. (Your server is now running)

I cannot find more https refs to modify in the install dirs:

ubuntu@topcat:~$ egrep 'https://(local|10)' -r authn.simple icat.server ids.server ids.storage_file topcat
Binary file topcat/topcat-2.2.0.war matches
ubuntu@topcat:~$ egrep 'http://(local|10)' -r authn.simple icat.server ids.server ids.storage_file topcat

ids.server/ids.properties:icat.url = http://localhost:8080<http://localhost:8080/>
topcat/topcat.json: "topcatUrl": "http://10.3.1.52:8080<http://10.3.1.52:8080/>",
topcat/topcat.json: "idsUrl": "http://10.3.1.52:8080<http://10.3.1.52:8080/>",
topcat/topcat.json: "icatUrl": "http://10.3.1.52:8080<http://10.3.1.52:8080/>",
topcat/topcat.json: "idsUrl": "http://10.3.1.52:8080<http://10.3.1.52:8080/>"
topcat/topcat.json: "idsUrl": "http://10.3.1.52:8080<http://10.3.1.52:8080/>"

Binary file topcat/topcat-2.2.0.war matches

I have also ran the 'setup install -v's for all components.

Attila

2017. március 7., kedd 9:27:09 UTC+1 időpontban Jody Salt a következőt írta:
It would suggest to me that you don’t have a valid ssl certificate installed.

As a quick test you can turn off https by going into each component’s <component name>-setup.properties file and setting 'secure=false’, you will also need to change any references from https://<server name>:8181/ to http://<server name>:8080 and then run ./setup install for each component.

[Attila Heidrich]

yes

ubuntu@topcat:~$ asadmin list-applications

authn.simple-1.1.0  <ejb, webservices, web>  

ids.server-1.6.0    <ejb, webservices, web>  

icat.server-4.8.0   <ejb, webservices, web>  

topcat-2.2.0        <ejb, webservices, web>  

Command list-applications executed successfully.

ubuntu@topcat:~$ curl localhost:8080/topcat/version;echo

{"value":"2.2.0"}

ubuntu@topcat:~$ 

[Attila Heidrich]

hmmm... and now it is working again without https. nothin ghappened here, just asked a collegue to try. works for him, and after I returned to my browser, now it works for me as well.

A

[jody...@stfc.ac.uk]

Did you refresh the browser? Because, topcat.json gets loaded in on the front end. So, if you update topcat.json you have to refresh your browser

[Attila Heidrich]

Yes, several times. :)

2017. március 7., kedd 13:45:06 UTC+1 időpontban Jody Salt a következőt írta:

Did you refresh the browser? Because, topcat.json gets loaded in on the front end. So, if you update topcat.json you have to refresh your browser

Never mind, I think I was able to modify every important piece. Now I can login without error messages, maybe we finally can start using the system.

Can you please recommend a frontend, which allows some kind of "high level" operations using the necessary dependencies, without having to create every little element by hand?

A