Here's the code I was running:
GlowScript 2.7 VPython
graph( fast=False )
g1 = gcurve( color=color.red, markers=True )
x = 0
dx = 0.1
while(x<pi):
rate(10)
g1.plot( pos=(x,sin(exp(cos(x)))) )
x = x + dx
I didn't have an animation window created, but when I added one, it also continued to animate, so I suppose I was mistaken in saying that the code itself paused.