There's no standard way to do that.. we'd normally recommend to store all data in a single flatbuffer to make this easier.
Ideally, you'd accumulate all data in a single FlatBufferBuilder.
If that's not possible and you wanted to serialize them individually, you could still combine them into a single buffer later on like this:
table Buffers { buffers:[Buffer]; }
table Buffer { buffer:[ubyte] (nested_flatbuffer: "MyRoot"); }
The nested_flatbuffer annotation creates a convenient accessor to the nested data.