SEVERE: Context [/fedora] startup failed due to previous errors | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [Thread-2] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [Thread-3] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [JotmBatch] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [JotmClock] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [TripleWriteThread: /var/lib/fedora/data/resourceIndex/xaStatementStore/xa.g_3012] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [TripleWriteThread: /var/lib/fedora/data/resourceIndex/xaStatementStore/xa.g_3120] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [TripleWriteThread: /var/lib/fedora/data/resourceIndex/xaStatementStore/xa.g_3201] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [Write-lock Reaper] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [Thread-5] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [ActiveMQ Task-1] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [ActiveMQ Task-2] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [BrokerService[localhost] Task-1] but has failed to stop it. This is very likely to create a memory leak. | |
Aug 14, 2014 10:32:54 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads | |
SEVERE: The web application [/fedora] appears to have started a thread named [Timer-0] but has failed to stop it. This is very likely to create a memory leak. Any ideas? This is driving me crazy! |
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WARN 2014-08-14 10:53:08.002 [main] (BrokerService) Store limit is 100000 mb, whilst the data directory: /var/lib/fedora2/data/activemq-data/localhost/KahaDB only has 36808 mb of usable space | |
ERROR 2014-08-14 10:53:08.002 [main] (BrokerService) Temporary Store limit is 50000 mb, whilst the temporary data directory: /var/lib/fedora2/data/activemq-data/localhost/tmp_storage only has 36808 mb of usable space | |
ERROR 2014-08-14 10:53:08.551 [main] (Server) Server failed to initialize | |
org.fcrepo.server.errors.ServerInitializationException: Failed to ingest system object(s) | |
at org.fcrepo.server.BasicServer.postInitServer(BasicServer.java:117) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.Server.init(Server.java:660) ~[fcrepo-server-3.6.2.jar:na] | |
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_15] | |
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_15] | |
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_15] | |
at java.lang.reflect.Method.invoke(Method.java:601) ~[na:1.7.0_15] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1546) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1487) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1419) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:518) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:455) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:192) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:585) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:895) [spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:425) [spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:282) [spring-web-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:204) [spring-web-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47) [spring-web-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4206) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardContext.start(StandardContext.java:4705) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:799) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:779) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:601) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:675) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:601) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:502) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1317) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:324) [catalina.jar:6.0.35] | |
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:142) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1065) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardHost.start(StandardHost.java:840) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardService.start(StandardService.java:525) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardServer.start(StandardServer.java:754) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.Catalina.start(Catalina.java:595) [catalina.jar:6.0.35] | |
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_15] | |
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_15] | |
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_15] | |
at java.lang.reflect.Method.invoke(Method.java:601) ~[na:1.7.0_15] | |
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289) [bootstrap.jar:6.0.35] | |
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414) [bootstrap.jar:6.0.35] | |
Caused by: org.fcrepo.server.errors.ObjectNotInLowlevelStorageException: Object not found in low-level storage: fedora-system:ContentModel-3.0 | |
at org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorage.retrieve(AkubraLowlevelStorage.java:414) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorage.retrieveObject(AkubraLowlevelStorage.java:179) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorageModule.retrieveObject(AkubraLowlevelStorageModule.java:82) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.storage.DefaultDOManager.getWriter(DefaultDOManager.java:745) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.BasicServer.preIngestIfNeeded(BasicServer.java:149) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.BasicServer.postInitServer(BasicServer.java:112) ~[fcrepo-server-3.6.2.jar:na] | |
... 44 common frames omitted | |
ERROR 2014-08-14 10:53:10.237 [main] (ContextLoader) Context initialization failed | |
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.fcrepo.server.Server' defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Invocation of init method failed; nested exception is org.fcrepo.server.errors.ServerInitializationException: Failed to ingest system object(s) | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1422) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:518) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:455) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:192) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:585) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:895) ~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:425) ~[spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:282) ~[spring-web-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:204) ~[spring-web-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47) [spring-web-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4206) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardContext.start(StandardContext.java:4705) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:799) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:779) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:601) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:675) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:601) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:502) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1317) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:324) [catalina.jar:6.0.35] | |
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:142) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1065) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardHost.start(StandardHost.java:840) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1057) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:463) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardService.start(StandardService.java:525) [catalina.jar:6.0.35] | |
at org.apache.catalina.core.StandardServer.start(StandardServer.java:754) [catalina.jar:6.0.35] | |
at org.apache.catalina.startup.Catalina.start(Catalina.java:595) [catalina.jar:6.0.35] | |
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_15] | |
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_15] | |
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_15] | |
at java.lang.reflect.Method.invoke(Method.java:601) ~[na:1.7.0_15] | |
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289) [bootstrap.jar:6.0.35] | |
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414) [bootstrap.jar:6.0.35] | |
Caused by: org.fcrepo.server.errors.ServerInitializationException: Failed to ingest system object(s) | |
at org.fcrepo.server.BasicServer.postInitServer(BasicServer.java:117) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.Server.init(Server.java:660) ~[fcrepo-server-3.6.2.jar:na] | |
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.7.0_15] | |
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) ~[na:1.7.0_15] | |
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.7.0_15] | |
at java.lang.reflect.Method.invoke(Method.java:601) ~[na:1.7.0_15] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1546) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1487) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1419) ~[spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] | |
... 36 common frames omitted | |
Caused by: org.fcrepo.server.errors.ObjectNotInLowlevelStorageException: Object not found in low-level storage: fedora-system:ContentModel-3.0 | |
at org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorage.retrieve(AkubraLowlevelStorage.java:414) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorage.retrieveObject(AkubraLowlevelStorage.java:179) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.storage.lowlevel.akubra.AkubraLowlevelStorageModule.retrieveObject(AkubraLowlevelStorageModule.java:82) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.storage.DefaultDOManager.getWriter(DefaultDOManager.java:745) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.BasicServer.preIngestIfNeeded(BasicServer.java:149) ~[fcrepo-server-3.6.2.jar:na] | |
at org.fcrepo.server.BasicServer.postInitServer(BasicServer.java:112) ~[fcrepo-server-3.6.2.jar:na] | |
... 44 common frames omitted |
Following installation, can you look at your FC database and confirm whether any tables were actually created? If there are no tables in the database, there's an easy fix.
Best,
Jason Loeffler
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