By default Express will render a common layout page as a wrapper around each individual page (so you can easily reuse the shell containing common markup on every page for example). If you don't want a layout you can do one of the following:
1) Call app.set("view options", { layout: false }) to tell Express not to render a layout on a global basis.
2) When rendering your view pass a layout parameter in the options: app.render("index", { layout: false }); to override the layout settings on an individual basis
3) Add layout.html to your views directory. Layout will have access to a special "body" property that contains the rendered output of your template. So you'd want something like:
<!DOCTYPE html>
<html>
<head>
<title>My Page</title>
</head>
<body>
{{html body}}
</body>
</html>
(If I'm remembering jqtpl correctly, anyway).
Cheers,
Joshua