I have a bit more info. First the file is not as big as I thought, just 1M, and this is what I'm seeing in the logfile:
13-01-16 15:37:58,453 DEBUG org.dspace.ctask.general.ClamScan @ Scanning wallenberg-gunnoe.mp4 . . .
2013-01-16 15:37:58,453 DEBUG org.dspace.storage.rdbms.DatabaseManager @ Running query "SELECT * FROM Handle WHERE resource_type_id = ? AND resource_id = ?" with parameters: 2,216250
2013-01-16 15:37:58,613 ERROR org.dspace.ctask.general.ClamScan @ Could not write to the socket . . .
2013-01-16 15:37:58,613 ERROR org.dspace.ctask.general.ClamScan @ Exception closing dataOutputStream
java.net.SocketException: Broken pipe
at java.net.SocketOutputStream.socketWrite0(Native Method)
at java.net.SocketOutputStream.socketWrite(SocketOutputStream.java:92)
at java.net.SocketOutputStream.write(SocketOutputStream.java:136)
at java.io.DataOutputStream.write(DataOutputStream.java:90)
Maybe the connection was lost because it took the file so long to upload?