Hi Mihaiela
We're not aware of any specific problems with large folders, though Droid may take a long time to run on those large files. Could it just be a problem with java running out of memory? If you haven't already done so, could you try increasing your Java heap memory size - just change the memory options in droid.bat or droid.sh, whichever you are using? If that doesn't help, then if you could give us some more details about your setup (operating system, java version, what memory values you are using etc) we can see if we can reproduce the problem.
Best regards
Graham
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