Several dependency errors when installing deducer on linux x86_64

[aanj...@gmail.com]

I am trying to install deducer on linux and am getting errors regarding packages not available and unable to compile. I have pasted relevalt lines of install log appearing on the screen:

* installing *source* package ‘minqa’ ...

** package ‘minqa’ successfully unpacked and MD5 sums checked

** libs

gfortran   -fpic  -g -O2  -c altmov.f -o altmov.o

make: gfortran: Command not found

/usr/lib64/R/etc/Makeconf:156: recipe for target 'altmov.o' failed

make: *** [altmov.o] Error 127

ERROR: compilation failed for package ‘minqa’

* removing ‘/home/ashu/R/x86_64-unknown-linux-gnu-library/3.1/minqa’

* installing *source* package ‘mvtnorm’ ...

** package ‘mvtnorm’ successfully unpacked and MD5 sums checked

** libs

gcc -std=gnu99 -I/usr/include/R/ -DNDEBUG  -D_FORTIFY_SOURCE=2    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong --param=ssp-buffer-size=4  -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o

gcc -std=gnu99 -I/usr/include/R/ -DNDEBUG  -D_FORTIFY_SOURCE=2    -fpic  -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong --param=ssp-buffer-size=4  -c miwa.c -o miwa.o

gfortran   -fpic  -g -O2  -c mvt.f -o mvt.o

make: gfortran: Command not found

/usr/lib64/R/etc/Makeconf:156: recipe for target 'mvt.o' failed

make: *** [mvt.o] Error 127

ERROR: compilation failed for package ‘mvtnorm’

* removing ‘/home/ashu/R/x86_64-unknown-linux-gnu-library/3.1/mvtnorm’

ERROR: dependency ‘minqa’ is not available for package ‘lme4’

* removing ‘/home/ashu/R/x86_64-unknown-linux-gnu-library/3.1/lme4’

ERROR: dependency ‘mvtnorm’ is not available for package ‘multcomp’

* removing ‘/home/ashu/R/x86_64-unknown-linux-gnu-library/3.1/multcomp’

ERROR: dependency ‘lme4’ is not available for package ‘pbkrtest’

* removing ‘/home/ashu/R/x86_64-unknown-linux-gnu-library/3.1/pbkrtest’

ERROR: dependencies ‘pbkrtest’, ‘lme4’ are not available for package ‘effects’

* removing ‘/home/ashu/R/x86_64-unknown-linux-gnu-library/3.1/effects’

ERROR: dependencies ‘multcomp’, ‘effects’ are not available for package ‘Deducer’

* removing ‘/home/ashu/R/x86_64-unknown-linux-gnu-library/3.1/Deducer’

The downloaded source packages are in

‘/tmp/RtmpXnyu84/downloaded_packages’

Warning messages:

1: In install.packages("Deducer") :

  installation of package ‘minqa’ had non-zero exit status

2: In install.packages("Deducer") :

  installation of package ‘mvtnorm’ had non-zero exit status

3: In install.packages("Deducer") :

  installation of package ‘lme4’ had non-zero exit status

4: In install.packages("Deducer") :

  installation of package ‘multcomp’ had non-zero exit status

5: In install.packages("Deducer") :

  installation of package ‘pbkrtest’ had non-zero exit status

6: In install.packages("Deducer") :

  installation of package ‘effects’ had non-zero exit status

7: In install.packages("Deducer") :

  installation of package ‘Deducer’ had non-zero exit status

> 

I tried several different mirrors but still the same. Other deducer dependencies like ggplot2 etc. got installed in the first instance.

.  

[Iurie Malai]

What is your OS? If it is Ubuntu, you can try to install the bellow packages, then try to reinstall Deducer.

sudo apt-get install libx11-dev libglu1-mesa-dev libxml2-dev

This can help to solve some problems with dependencies.

Described here: http://r-interface.blogspot.com/2012/04/install-r-jgr-and-deducer-in-ubuntu.html