Microbiome Cluster Network

[Khan Imran]

Hello, I am new to cytoscape. I want to make a cluster network for my data, the same like this one http://www.nature.com/srep/2013/130311/srep01413/fig_tab/srep01413_F5.html

But I don't know how I can make such representation. Kindly help me

[Muhammad Adil Salim]

http://wiki.cytoscape.org/ 

Go through it ,it will help. 

 it also depend the type of data you have. 

Adil

[piet molenaar]

Hi,

This is a quite complicated figure based on thorough data analysis and visualization. Imho there is no simple out-of-the-box protocol to reproduce this. I'd advice you to first look into some data visualization tutorials for Cytoscape: http://opentutorials.cgl.ucsf.edu/index.php/Portal:Cytoscape3.

You'd might also want to contact the authors of the paper and ask them for a session file containing the actual visual style used.

Cheers,

Piet  

On Sat, Feb 7, 2015 at 11:07 PM, Khan Imran <1986kh...@gmail.com> wrote:

Hello, I am new to cytoscape. I want to make a cluster network for my data, the same like this one http://www.nature.com/srep/2013/130311/srep01413/fig_tab/srep01413_F5.html

But I don't know how I can make such representation. Kindly help me

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Piet Molenaar
piet...@gmail.com
Department of Oncogenomics, M1-131
Academic Medical Center
University of Amsterdam
Meibergdreef 9
1105 AZ Amsterdam
the Netherlands

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