Shortest path app

[piet molenaar]

Hi,

Recently you reported a bug what was actually an app related question about how to find a shortest path. The PESCA app will help you. It is here: http://apps.cytoscape.org/apps/pesca30

You might want to try PathLinker also: http://apps.cytoscape.org/apps/pathlinker

All are available for the most recent version of Cytoscape.

Hope this helps,

Piet

--

Piet Molenaar
piet...@gmail.com
Department of Oncogenomics, M1-131
Academic Medical Center
University of Amsterdam
Meibergdreef 9
1105 AZ Amsterdam
the Netherlands

tel (+31) 20-5666592
fax (+31) 20-6918626

[piet molenaar]

Hi, 

It is not necessary to select a network; pesca will calculate the shortest path between selected nodes in the current network (so also your own constructed network). See screenshot attached. 

Hope this helps,

Piet

PS: I'm cc-ing this to helpdesk to allow the cytoscape community access for future reference.

On Fri, Jul 15, 2016 at 10:29 AM, 路芳 <lufan...@163.com> wrote:

Dear，

Thank you very much for your reply.

 I try to use PESCA app and PathLinker to find a shortest path, but unfortunately PESCA app can not select a network constructed by myself. Moreover, PathLinker should  input sources and targets which I try the name and uniprot ID of the nodes, but it showed that can not find the node. I have some doubts about the apps that wish you to resolve.

Looking forward to your reply.

Thank you very much.

Best wishes.

At 2016-07-15 00:45:15, "piet molenaar" <piet...@gmail.com> wrote:

Hi,

Recently you reported a bug what was actually an app related question about how to find a shortest path. The PESCA app will help you. It is here: http://apps.cytoscape.org/apps/pesca30

You might want to try PathLinker also: http://apps.cytoscape.org/apps/pathlinker

All ar001e available for the most recent version of Cytoscape.

Hope this helps,

Piet

--

Piet Molenaar
piet...@gmail.com
Department of Oncogenomics, M1-131
Academic Medical Center
University of Amsterdam
Meibergdreef 9
1105 AZ Amsterdam
the Netherlands

tel (+31) 20-5666592
fax (+31) 20-6918626

 

--

Piet Molenaar
piet.amc@gmail.com