windows 8 64 bits, cytoscape 3.1 doesnt start pl help

[Duleep Samuel]

windows 8 64 bits, cytoscape 3.1 doesnt start pl help, Dr.Samuel, IIHR,Bangalore, India

ERROR: Error parsing system bundle export statement: org.osgi.framework; version=1.5.0, org.osgi.framework.launch; version=1.0.0, org.osgi.framework.hooks.service; version=1.0.0, org.osgi.service.packageadmin; version=1.2.0, org.osgi.service.startlevel; version=1.1.0, org.osgi.service.url; version=1.0.0, org.osgi.util.tracker; version=1.4.0, org.apache.karaf.jaas.boot; version=2.2.11, org.apache.karaf.version; version=2.2.11, ,org.apache.karaf.branding,org.cytoscape.launcher.internal,com.sun.xml.internal.bind,com.apple.eawt; (java.lang.IllegalArgumentException: No paths specified in header: )

java.lang.IllegalArgumentException: No paths specified in header: 

at org.apache.felix.framework.util.manifestparser.ManifestParser.parseStandardHeaderClause(ManifestParser.java:1462)

at org.apache.felix.framework.util.manifestparser.ManifestParser.parseStandardHeader(ManifestParser.java:1430)

at org.apache.felix.framework.util.manifestparser.ManifestParser.<init>(ManifestParser.java:175)

at org.apache.felix.framework.ExtensionManager.<init>(ExtensionManager.java:193)

at org.apache.felix.framework.Felix.<init>(Felix.java:372)

at org.apache.felix.framework.FrameworkFactory.newFramework(FrameworkFactory.java:28)

at org.apache.karaf.main.Main.launch(Main.java:271)

at org.apache.karaf.main.Main.main(Main.java:440)

at org.cytoscape.launcher.internal.Launcher.main(Launcher.java:76)

at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)

at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.lang.reflect.Method.invoke(Method.java:491)

at com.exe4j.runtime.LauncherEngine.launch(Unknown Source)

at com.exe4j.runtime.WinLauncher.main(Unknown Source)

ERROR: Bundle org.ops4j.pax.url.mvn [1] Error starting mvn:org.ops4j.pax.url/pax-url-mvn/1.2.8 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.url.mvn [1]: Unable to resolve 1.0: missing requirement [1.0] package; (package=javax.net.ssl))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.url.mvn [1]: Unable to resolve 1.0: missing requirement [1.0] package; (package=javax.net.ssl)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.ops4j.pax.url.wrap [2] Error starting mvn:org.ops4j.pax.url/pax-url-wrap/1.2.8 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.url.wrap [2]: Unable to resolve 2.0: missing requirement [2.0] package; (package=javax.net.ssl))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.url.wrap [2]: Unable to resolve 2.0: missing requirement [2.0] package; (package=javax.net.ssl)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.ops4j.pax.logging.pax-logging-service [3] Error starting mvn:org.ops4j.pax.logging/pax-logging-service/1.6.10 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.logging.pax-logging-service [3]: Unable to resolve 3.0: missing requirement [3.0] package; (package=javax.xml.parsers))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.logging.pax-logging-service [3]: Unable to resolve 3.0: missing requirement [3.0] package; (package=javax.xml.parsers)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.ops4j.pax.logging.pax-logging-api [4] Error starting mvn:org.ops4j.pax.logging/pax-logging-api/1.6.10 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.logging.pax-logging-api [4]: Unable to resolve 4.0: missing requirement [4.0] package; (package=javax.xml.parsers))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.logging.pax-logging-api [4]: Unable to resolve 4.0: missing requirement [4.0] package; (package=javax.xml.parsers)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.felix.configadmin [5] Error starting mvn:org.apache.felix/org.apache.felix.configadmin/1.2.8 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.felix.configadmin [5]: Unable to resolve 5.0: missing requirement [5.0] package; (&(package=org.osgi.framework)(version>=1.3.0)))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.felix.configadmin [5]: Unable to resolve 5.0: missing requirement [5.0] package; (&(package=org.osgi.framework)(version>=1.3.0))

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.felix.fileinstall [6] Error starting mvn:org.apache.felix/org.apache.felix.fileinstall/3.2.4 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.felix.fileinstall [6]: Unable to resolve 6.0: missing requirement [6.0] package; (&(package=org.osgi.framework)(version>=1.4.0)(!(version>=2.0.0))))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.felix.fileinstall [6]: Unable to resolve 6.0: missing requirement [6.0] package; (&(package=org.osgi.framework)(version>=1.4.0)(!(version>=2.0.0)))

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.aries.blueprint [7] Error starting mvn:org.apache.aries.blueprint/org.apache.aries.blueprint/0.3.2 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.blueprint [7]: Unable to resolve 7.0: missing requirement [7.0] package; (package=javax.xml.parsers))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.blueprint [7]: Unable to resolve 7.0: missing requirement [7.0] package; (package=javax.xml.parsers)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.aries.util [9] Error starting mvn:org.apache.aries/org.apache.aries.util/0.3.1 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.util [9]: Unable to resolve 9.0: missing requirement [9.0] package; (&(package=org.osgi.framework)(version>=1.5.0)(!(version>=2.0.0))))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.util [9]: Unable to resolve 9.0: missing requirement [9.0] package; (&(package=org.osgi.framework)(version>=1.5.0)(!(version>=2.0.0)))

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.aries.proxy [10] Error starting mvn:org.apache.aries.proxy/org.apache.aries.proxy/0.3.1 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.proxy [10]: Unable to resolve 10.0: missing requirement [10.0] package; (&(package=org.apache.aries.util)(version>=0.3.0)(!(version>=1.0.0))) [caused by: Unable to resolve 9.0: missing requirement [9.0] package; (&(package=org.osgi.framework)(version>=1.5.0)(!(version>=2.0.0)))])

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.proxy [10]: Unable to resolve 10.0: missing requirement [10.0] package; (&(package=org.apache.aries.util)(version>=0.3.0)(!(version>=1.0.0))) [caused by: Unable to resolve 9.0: missing requirement [9.0] package; (&(package=org.osgi.framework)(version>=1.5.0)(!(version>=2.0.0)))]

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.deployer.blueprint [11] Error starting mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.blueprint/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.blueprint [11]: Unable to resolve 11.0: missing requirement [11.0] package; (package=javax.xml.parsers))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.blueprint [11]: Unable to resolve 11.0: missing requirement [11.0] package; (package=javax.xml.parsers)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.deployer.spring [12] Error starting mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.spring/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.spring [12]: Unable to resolve 12.0: missing requirement [12.0] package; (package=javax.xml.parsers))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.spring [12]: Unable to resolve 12.0: missing requirement [12.0] package; (package=javax.xml.parsers)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.diagnostic.common [13] Error starting mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.common/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.diagnostic.common [13]: Unable to resolve 13.0: missing requirement [13.0] package; (&(package=org.apache.karaf.features)(version>=2.2.0)(!(version>=3.0.0))) [caused by: Unable to resolve 34.0: missing requirement [34.0] package; (package=javax.xml.parsers)])

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.diagnostic.common [13]: Unable to resolve 13.0: missing requirement [13.0] package; (&(package=org.apache.karaf.features)(version>=2.2.0)(!(version>=3.0.0))) [caused by: Unable to resolve 34.0: missing requirement [34.0] package; (package=javax.xml.parsers)]

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.aries.jmx.blueprint [14] Error starting mvn:org.apache.aries.jmx/org.apache.aries.jmx.blueprint/0.3 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.blueprint [14]: Unable to resolve 14.0: missing requirement [14.0] package; (package=javax.management))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.blueprint [14]: Unable to resolve 14.0: missing requirement [14.0] package; (package=javax.management)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.shell.ssh [15] Error starting mvn:org.apache.karaf.shell/org.apache.karaf.shell.ssh/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.ssh [15]: Unable to resolve 15.0: missing requirement [15.0] package; (package=javax.security.auth))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.ssh [15]: Unable to resolve 15.0: missing requirement [15.0] package; (package=javax.security.auth)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.features.command [16] Error starting mvn:org.apache.karaf.features/org.apache.karaf.features.command/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.features.command [16]: Unable to resolve 16.0: missing requirement [16.0] package; (package=javax.management))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.features.command [16]: Unable to resolve 16.0: missing requirement [16.0] package; (package=javax.management)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.jaas.modules [17] Error starting mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.modules/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.modules [17]: Unable to resolve 17.0: missing requirement [17.0] package; (package=javax.naming))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.modules [17]: Unable to resolve 17.0: missing requirement [17.0] package; (package=javax.naming)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.jaas.config [19] Error starting mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.config/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.config [19]: Unable to resolve 19.0: missing requirement [19.0] package; (package=javax.net.ssl))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.config [19]: Unable to resolve 19.0: missing requirement [19.0] package; (package=javax.net.ssl)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.shell.packages [20] Error starting mvn:org.apache.karaf.shell/org.apache.karaf.shell.packages/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.packages [20]: Unable to resolve 20.0: missing requirement [20.0] package; (&(package=org.apache.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)])

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.packages [20]: Unable to resolve 20.0: missing requirement [20.0] package; (&(package=org.apache.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)]

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.shell.osgi [21] Error starting mvn:org.apache.karaf.shell/org.apache.karaf.shell.osgi/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.osgi [21]: Unable to resolve 21.0: missing requirement [21.0] package; (&(package=jline)(version>=2.9.0)(!(version>=3.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)])

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.osgi [21]: Unable to resolve 21.0: missing requirement [21.0] package; (&(package=jline)(version>=2.9.0)(!(version>=3.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)]

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.aries.jmx.api [22] Error starting mvn:org.apache.aries.jmx/org.apache.aries.jmx.api/0.3 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.api [22]: Unable to resolve 22.0: missing requirement [22.0] package; (package=javax.management.openmbean))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.api [22]: Unable to resolve 22.0: missing requirement [22.0] package; (package=javax.management.openmbean)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.sshd.core [23] Error starting mvn:org.apache.sshd/sshd-core/0.8.0 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.sshd.core [23]: Unable to resolve 23.0: missing requirement [23.0] package; (package=javax.crypto))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.sshd.core [23]: Unable to resolve 23.0: missing requirement [23.0] package; (package=javax.crypto)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.admin.core [24] Error starting mvn:org.apache.karaf.admin/org.apache.karaf.admin.core/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.admin.core [24]: Unable to resolve 24.0: missing requirement [24.0] package; (package=javax.management))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.admin.core [24]: Unable to resolve 24.0: missing requirement [24.0] package; (package=javax.management)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.diagnostic.command [25] Error starting mvn:org.apache.karaf.diagnostic/org.apache.karaf.diagnostic.command/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.diagnostic.command [25]: Unable to resolve 25.0: missing requirement [25.0] package; (&(package=org.apache.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)])

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.diagnostic.command [25]: Unable to resolve 25.0: missing requirement [25.0] package; (&(package=org.apache.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)]

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.shell.console [26] Error starting mvn:org.apache.karaf.shell/org.apache.karaf.shell.console/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.console [26]: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.console [26]: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.shell.dev [27] Error starting mvn:org.apache.karaf.shell/org.apache.karaf.shell.dev/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.dev [27]: Unable to resolve 27.0: missing requirement [27.0] package; (package=javax.net.ssl))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.dev [27]: Unable to resolve 27.0: missing requirement [27.0] package; (package=javax.net.ssl)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.deployer.features [28] Error starting mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.features/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.features [28]: Unable to resolve 28.0: missing requirement [28.0] package; (package=javax.xml.parsers))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.features [28]: Unable to resolve 28.0: missing requirement [28.0] package; (package=javax.xml.parsers)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.mina.core [29] Error starting mvn:org.apache.mina/mina-core/2.0.5 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.mina.core [29]: Unable to resolve 29.0: missing requirement [29.0] package; (package=javax.crypto))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.mina.core [29]: Unable to resolve 29.0: missing requirement [29.0] package; (package=javax.crypto)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.jaas.command [30] Error starting mvn:org.apache.karaf.jaas/org.apache.karaf.jaas.command/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.command [30]: Unable to resolve 30.0: missing requirement [30.0] package; (package=javax.management))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.command [30]: Unable to resolve 30.0: missing requirement [30.0] package; (package=javax.management)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.admin.command [31] Error starting mvn:org.apache.karaf.admin/org.apache.karaf.admin.command/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.admin.command [31]: Unable to resolve 31.0: missing requirement [31.0] package; (package=javax.management))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.admin.command [31]: Unable to resolve 31.0: missing requirement [31.0] package; (package=javax.management)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.aries.jmx.core [32] Error starting mvn:org.apache.aries.jmx/org.apache.aries.jmx.core/0.3.1 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.core [32]: Unable to resolve 32.0: missing requirement [32.0] package; (package=javax.management))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.core [32]: Unable to resolve 32.0: missing requirement [32.0] package; (package=javax.management)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.deployer.kar [33] Error starting mvn:org.apache.karaf.deployer/org.apache.karaf.deployer.kar/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.kar [33]: Unable to resolve 33.0: missing requirement [33.0] package; (package=javax.xml.parsers))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.kar [33]: Unable to resolve 33.0: missing requirement [33.0] package; (package=javax.xml.parsers)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.features.core [34] Error starting mvn:org.apache.karaf.features/org.apache.karaf.features.core/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.features.core [34]: Unable to resolve 34.0: missing requirement [34.0] package; (package=javax.xml.parsers))

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.features.core [34]: Unable to resolve 34.0: missing requirement [34.0] package; (package=javax.xml.parsers)

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.shell.log [35] Error starting mvn:org.apache.karaf.shell/org.apache.karaf.shell.log/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.log [35]: Unable to resolve 35.0: missing requirement [35.0] package; (&(package=org.apache.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)])

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.log [35]: Unable to resolve 35.0: missing requirement [35.0] package; (&(package=org.apache.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)]

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

ERROR: Bundle org.apache.karaf.shell.commands [36] Error starting mvn:org.apache.karaf.shell/org.apache.karaf.shell.commands/2.2.11 (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.commands [36]: Unable to resolve 36.0: missing requirement [36.0] package; (&(package=jline)(version>=2.9.0)(!(version>=3.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)])

org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.commands [36]: Unable to resolve 36.0: missing requirement [36.0] package; (&(package=jline)(version>=2.9.0)(!(version>=3.0.0))) [caused by: Unable to resolve 26.0: missing requirement [26.0] package; (package=javax.security.auth)]

at org.apache.felix.framework.Felix.resolveBundle(Felix.java:3564)

at org.apache.felix.framework.Felix.startBundle(Felix.java:1797)

at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1192)

at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:266)

at java.lang.Thread.run(Thread.java:724)

[Tim Hull]

What version of Java are you using? If you are using something other than 64-bit Oracle Java 6 or 7, you may want to try installing the latest 64-bit Java 7 JVM from Oracle. 

If that doesn't resolve the issue, could you try clearing the CytoscapeConfiguration directory and restarting? Note that this will erase any installed apps - if that is a problem, you may want to try just clearing the cache (under CytoscapeConfiguration/3/karaf_data)...

Hope this helps..

Tim

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[Duleep Samuel]

I am sure I am using JAVA 64 bits, I will try clearing the cache, thanks for replying, Samuel

C:\Users\dksamuel_now>java -version

java version "1.8.0-ea"

Java(TM) SE Runtime Environment (build 1.8.0-ea-b91)

Java HotSpot(TM) 64-Bit Server VM (build 25.0-b33, mixed mode)

C:\Users\dksamuel_now>

[Barry Demchak]

Samuel ...

It looks like you may be using Java 8. If so, would you mind uninstalling it an trying 64 bit Java 7??

Thanks.

[Duleep Samuel]

Thanks, but I cant downgrade JAVA, I will wait till a patch is made, till then I will install on Fedora 20 and use (It installed without any hitch and works nice), thanks Samuel

[Barry Demchak]

Thanks, Duleep --

A question, if I might: Is there a technical reason you must use JVM8? Is it required by your OS for some reason?? I'm hoping to learn some association that I'm not aware of.

Thanks.

vvvvvvvvvvvvvvvvvvvvvvvvvvvv
: Barry Demchak, PhD
: UC San Diego, Department of Medicine
: https://sosa.ucsd.edu/confluence/display/~bdemchak/Home
: (858) 452-8700
vvvvvvvvvvvvvvvvvvvvvvvvvvvv

[Barry Demchak]

Thanks, Duleep –

 

FYI, we intend to support Java 8 once it’s released … that is, we don’t intend to rely on any Java 8 features. Java 8 hasn’t been released yet, and Cytoscape has dependencies that make it *fail* on Java 8. So, there won’t be a working Cytoscape on Java 8 for at least a couple of months.

 

From: Duleep Samuel [mailto:dksa...@gmail.com]
Sent: Monday, March 17, 2014 5:54 AM
To: Barry Demchak
Subject: RE: [cytoscape-helpdesk] windows 8 64 bits, cytoscape 3.1 doesnt start pl help

 

Not for OS, but automatic update is nice. Really JAVA 8 in Win 8 . 64 bits is really better. Thanks for your reply, Samuel

Sent from my Windows Phone

---

[Chris Morris]

I have this same error with Java 7:

C:\Users\cm65>java -version

java version "1.7.0_21"

Java(TM) SE Runtime Environment (build 1.7.0_21-b11)

Java HotSpot(TM) 64-Bit Server VM (build 23.21-b01, mixed mode)

[Tim Hull]

You shouldn't get the error on Java 7 - are you sure you don't have Java 8 installed as well? Cytoscape may be using a different version of Java than the command line - it doesn't use the PATH. If that is the issue, setting JAVA_HOME to your Java 7 installation directory (or uninstalling Java 8) should resolve the issue.

If you don't have Java 8 installed, you may want to try upgrading to the latest Java 7 - 7u21 is quite out of date.. If it still happens then, it would help if you could share the exact error message you are getting...

Hope this helps...

Tim

--