After "successfully" building Cy3, I tried running the result and it blow up. I tried running from Win7 command prompt (cytoscape.bat) and also GitBash (cytoscape.sh). Both get the same set of errors. The splash screen comes up, then it dies claiming Exported package names can't be zero length and then a whole bunch of missing requirement errors:
Â
/c/work/Cy3.1.2-src/cytoscape/gui-distribution/assembly/target/cytoscape 527%>cytoscape.sh
cat: /proc/meminfo: No such file or directory
ERROR: Error parsing system bundle export statement: org.osgi.framework.startlevel;uses:="org.osgi.framework";version="1
.0", org.osgi.framework.wiring;uses:="org.osgi.framework";version="1.1", org.osgi.framework.hooks.bundle;uses:="org.osgi
.framework";version="1.1", org.osgi.framework.hooks.service;uses:="org.osgi.framework";version="1.1", org.osgi.framework
.hooks.resolver;uses:="org.osgi.framework.wiring";version="1.0", org.osgi.framework.launch;uses:="org.osgi.framework";ve
rsion="1.1", org.osgi.framework.namespace;uses:="org.osgi.resource";version="1.0", org.osgi.framework;version="1.7", org
.osgi.framework.hooks.weaving;uses:="org.osgi.framework.wiring";version="1.0",org.osgi.resource;version="1.0",org.osgi.s
ervice.url;version="1.0",org.osgi.service.startlevel;uses:="org.osgi.framework";version="1.1",org.osgi.service.packagead
min;uses:="org.osgi.framework";version="1.2",org.osgi.service.url;version="1.0", org.osgi.util.tracker;uses:="org.osgi.f
ramework";version="1.5.1", org.apache.karaf.jaas.boot;version="3.0.1", org.apache.karaf.jaas.boot.principal;version="3.0
.1", org.apache.karaf.management.boot;version="3.0.1", org.apache.karaf.version;version="3.0.1", javax.accessibility, ja
vax.activation, javax.activity, javax.annotation;version="1.1", javax.annotation.processing;version="1.1", javax.crypto,
javax.crypto.interfaces, javax.crypto.spec, javax.imageio, javax.imageio.event, javax.imageio.metadata, javax.imageio.p
lugins.bmp, javax.imageio.plugins.jpeg, javax.imageio.spi, javax.imageio.stream, javax.jws, javax.jws.soap, javax.lang.m
odel, javax.lang.model.element, javax.lang.model.type, javax.lang.model.util, javax.management, javax.management.loading
, javax.management.modelmbean, javax.management.monitor, javax.management.openmbean, javax.management.relation, javax.ma
nagement.remote, javax.management.remote.rmi, javax.management.timer, javax.naming, javax.naming.directory, javax.naming
.event, javax.naming.ldap, javax.naming.spi, javax.net, javax.net.ssl, javax.print, javax.print.attribute, javax.print.a
ttribute.standard, javax.print.event, javax.rmi, javax.rmi.CORBA, javax.rmi.ssl, javax.script, javax.security.auth, java
x.security.auth.callback, javax.security.auth.kerberos, javax.security.auth.login, javax.security.auth.spi, javax.securi
ty.auth.x500, javax.security.cert, javax.security.sasl, javax.sound.midi, javax.sound.midi.spi, javax.sound.sampled, jav
ax.sound.sampled.spi, javax.sql, javax.sql.rowset, javax.sql.rowset.serial, javax.sql.rowset.spi, javax.swing, javax.swi
ng.border, javax.swing.colorchooser, javax.swing.event, javax.swing.filechooser, javax.swing.plaf, javax.swing.plaf.basi
c, javax.swing.plaf.metal, javax.swing.plaf.multi, javax.swing.plaf.synth, javax.swing.table, javax.swing.text, javax.sw
ing.text.html, javax.swing.text.html.parser, javax.swing.text.rtf, javax.swing.tree, javax.swing.undo, javax.tools, java
x.transaction; javax.transaction.xa; partial=true; mandatory:=partial, javax.xml, javax.xml.bind, javax.xml.bind.annotat
ion, javax.xml.bind.annotation.adapters, javax.xml.bind.attachment, javax.xml.bind.helpers, javax.xml.bind.util, javax.x
ml.crypto, javax.xml.crypto.dom, javax.xml.crypto.dsig, javax.xml.crypto.dsig.dom, javax.xml.crypto.dsig.keyinfo, javax.
xml.crypto.dsig.spec, javax.xml.datatype, javax.xml.namespace, javax.xml.parsers, javax.xml.soap, javax.xml.transform, j
avax.xml.transform.dom, javax.xml.transform.sax, javax.xml.transform.stax, javax.xml.transform.stream, javax.xml.validat
ion, javax.xml.ws, javax.xml.ws.handler, javax.xml.ws.handler.soap, javax.xml.ws.http, javax.xml.ws.soap, javax.xml.ws.s
pi, javax.xml.ws.wsaddressing, javax.xml.xpath, org.ietf.jgss, org.omg.CORBA, org.omg.CORBA_2_3, org.omg.CORBA_2_3.porta
ble, org.omg.CORBA.DynAnyPackage, org.omg.CORBA.ORBPackage, org.omg.CORBA.portable, org.omg.CORBA.TypeCodePackage, org.o
mg.CosNaming, org.omg.CosNaming.NamingContextExtPackage, org.omg.CosNaming.NamingContextPackage, org.omg.Dynamic, org.om
g.DynamicAny, org.omg.DynamicAny.DynAnyFactoryPackage, org.omg.DynamicAny.DynAnyPackage, org.omg.IOP, org.omg.IOP.CodecF
actoryPackage, org.omg.IOP.CodecPackage, org.omg.Messaging, org.omg.PortableInterceptor, org.omg.PortableInterceptor.ORB
InitInfoPackage, org.omg.PortableServer, org.omg.PortableServer.CurrentPackage, org.omg.PortableServer.POAManagerPackage
, org.omg.PortableServer.POAPackage, org.omg.PortableServer.portable, org.omg.PortableServer.ServantLocatorPackage, org.
omg.SendingContext, org.omg.stub.java.rmi, org.omg.stub.javax.management.remote.rmi, org.w3c.dom, org.w3c.dom.bootstrap,
org.w3c.dom.css, org.w3c.dom.events, org.w3c.dom.html, org.w3c.dom.ls, org.w3c.dom.ranges, org.w3c.dom.stylesheets, org
.w3c.dom.traversal, org.w3c.dom.views, org.w3c.dom.xpath, org.xml.sax, org.xml.sax.ext, org.xml.sax.helpers,org.apache.k
araf.branding,org.cytoscape.launcher.internal,com.sun.xml.internal.bind,com.apple.eawt; (org.osgi.framework.BundleExcept
ion: Exported package names cannot be zero length.)
org.osgi.framework.BundleException: Exported package names cannot be zero length.
       at org.apache.felix.framework.util.manifestparser.ManifestParser.normalizeExportClauses(ManifestParser.java:744)
Â
       at org.apache.felix.framework.util.manifestparser.ManifestParser.<init>(ManifestParser.java:191)
       at org.apache.felix.framework.ExtensionManager.<init>(ExtensionManager.java:221)
       at org.apache.felix.framework.Felix.<init>(Felix.java:385)
       at org.apache.felix.framework.FrameworkFactory.newFramework(FrameworkFactory.java:28)
       at org.apache.karaf.main.Main.launch(Main.java:236)
       at org.apache.karaf.main.Main.main(Main.java:171)
       at org.cytoscape.launcher.internal.Launcher.main(Launcher.java:76)
ERROR: Bundle org.ops4j.pax.url.mvn [1] Error starting org/ops4j/pax/url/pax-url-mvn/1.2.8/pax-url-mvn-1.2.8.jar (org.os
gi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.url.mvn [1]: Unable to resolve 1.0: missing
requirement [1.0] osgi.wiring.package; (osgi.wiring.package=javax.net.ssl))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.url.mvn [1]: Unable to resolve 1.0: mi
ssing requirement [1.0] osgi.wiring.package; (osgi.wiring.package=javax.net.ssl)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.ops4j.pax.url.wrap [2] Error starting org/ops4j/pax/url/pax-url-wrap/1.2.8/pax-url-wrap-1.2.8.jar (org
.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.url.wrap [2]: Unable to resolve 2.0: miss
ing requirement [2.0] osgi.wiring.package; (osgi.wiring.package=javax.net.ssl))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.url.wrap [2]: Unable to resolve 2.0: m
issing requirement [2.0] osgi.wiring.package; (osgi.wiring.package=javax.net.ssl)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.ops4j.pax.logging.pax-logging-api [3] Error starting org/ops4j/pax/logging/pax-logging-api/1.6.10/pax-
logging-api-1.6.10.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.logging.pax-lo
gging-api [3]: Unable to resolve 3.0: missing requirement [3.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.pars
ers))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.logging.pax-logging-api [3]: Unable to
resolve 3.0: missing requirement [3.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.ops4j.pax.logging.pax-logging-service [4] Error starting org/ops4j/pax/logging/pax-logging-service/1.6
.10/pax-logging-service-1.6.10.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.lo
gging.pax-logging-service [4]: Unable to resolve 4.0: missing requirement [4.0] osgi.wiring.package; (osgi.wiring.packag
e=javax.xml.parsers))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.ops4j.pax.logging.pax-logging-service [4]: Unabl
e to resolve 4.0: missing requirement [4.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.felix.configadmin [5] Error starting org/apache/felix/org.apache.felix.configadmin/1.2.8/org.ap
ache.felix.configadmin-1.2.8.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.felix.c
onfigadmin [5]: Unable to resolve 5.0: missing requirement [5.0] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.fr
amework)(version>=1.3.0)))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.felix.configadmin [5]: Unable to resolve
5.0: missing requirement [5.0] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.framework)(version>=1.3.0))
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.felix.fileinstall [6] Error starting org/apache/felix/org.apache.felix.fileinstall/3.2.4/org.ap
ache.felix.fileinstall-3.2.4.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.felix.f
ileinstall [6]: Unable to resolve 6.0: missing requirement [6.0] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.fr
amework)(version>=1.4.0)(!(version>=2.0.0))))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.felix.fileinstall [6]: Unable to resolve
6.0: missing requirement [6.0] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.framework)(version>=1.4.0)(!(version
>=2.0.0)))
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.aries.util [8] Error starting org/apache/aries/org.apache.aries.util/0.3.1/org.apache.aries.uti
l-0.3.1.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.util [8]: Unable to re
solve 8.0: missing requirement [8.0] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.framework)(version>=1.5.0)(!(v
ersion>=2.0.0))))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.util [8]: Unable to resolve 8.0: mi
ssing requirement [8.0] osgi.wiring.package; (&(osgi.wiring.package=org.osgi.framework)(version>=1.5.0)(!(version>=2.0.0
)))
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.aries.proxy [9] Error starting org/apache/aries/proxy/org.apache.aries.proxy/0.3.1/org.apache.a
ries.proxy-0.3.1.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.proxy [9]: Un
able to resolve 9.0: missing requirement [9.0] osgi.wiring.package; (&(osgi.wiring.package=org.apache.aries.util)(versio
n>=0.3.0)(!(version>=1.0.0))) [caused by: Unable to resolve 8.0: missing requirement [8.0] osgi.wiring.package; (&(osgi.
wiring.package=org.osgi.framework)(version>=1.5.0)(!(version>=2.0.0)))])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.proxy [9]: Unable to resolve 9.0: m
issing requirement [9.0] osgi.wiring.package; (&(osgi.wiring.package=org.apache.aries.util)(version>=0.3.0)(!(version>=1
.0.0))) [caused by: Unable to resolve 8.0: missing requirement [8.0] osgi.wiring.package; (&(osgi.wiring.package=org.osg
i.framework)(version>=1.5.0)(!(version>=2.0.0)))]
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.aries.blueprint [10] Error starting org/apache/aries/blueprint/org.apache.aries.blueprint/0.3.2
/org.apache.aries.blueprint-0.3.2.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.ar
ies.blueprint [10]: Unable to resolve 10.0: missing requirement [10.0] osgi.wiring.package; (osgi.wiring.package=javax.x
ml.parsers))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.blueprint [10]: Unable to resolve 1
0.0: missing requirement [10.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.deployer.spring [33] Error starting org/apache/karaf/deployer/org.apache.karaf.deployer.s
pring/2.2.11/org.apache.karaf.deployer.spring-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in b
undle org.apache.karaf.deployer.spring [33]: Unable to resolve 33.0: missing requirement [33.0] osgi.wiring.package; (os
gi.wiring.package=javax.xml.parsers))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.spring [33]: Unable to res
olve 33.0: missing requirement [33.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.deployer.blueprint [34] Error starting org/apache/karaf/deployer/org.apache.karaf.deploye
r.blueprint/2.2.11/org.apache.karaf.deployer.blueprint-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constr
aint in bundle org.apache.karaf.deployer.blueprint [34]: Unable to resolve 34.0: missing requirement [34.0] osgi.wiring.
package; (osgi.wiring.package=javax.xml.parsers))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.blueprint [34]: Unable to
resolve 34.0: missing requirement [34.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.shell.console [11] Error starting org/apache/karaf/shell/org.apache.karaf.shell.console/2
.2.11/org.apache.karaf.shell.console-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org
.apache.karaf.shell.console [11]: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.wiring.p
ackage=javax.security.auth))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.console [11]: Unable to resol
ve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.wiring.package=javax.security.auth)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.shell.osgi [12] Error starting org/apache/karaf/shell/org.apache.karaf.shell.osgi/2.2.11/
org.apache.karaf.shell.osgi-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.k
araf.shell.osgi [12]: Unable to resolve 12.0: missing requirement [12.0] osgi.wiring.package; (&(osgi.wiring.package=jli
ne)(version>=2.9.0)(!(version>=3.0.0))) [caused by: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.packa
ge; (osgi.wiring.package=javax.security.auth)])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.osgi [12]: Unable to resolve
12.0: missing requirement [12.0] osgi.wiring.package; (&(osgi.wiring.package=jline)(version>=2.9.0)(!(version>=3.0.0)))
[caused by: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.wiring.package=javax.security.
auth)]
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.shell.log [13] Error starting org/apache/karaf/shell/org.apache.karaf.shell.log/2.2.11/or
g.apache.karaf.shell.log-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.kara
f.shell.log [13]: Unable to resolve 13.0: missing requirement [13.0] osgi.wiring.package; (&(osgi.wiring.package=org.apa
che.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 11.0: missing requirement [1
1.0] osgi.wiring.package; (osgi.wiring.package=javax.security.auth)])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.log [13]: Unable to resolve 1
3.0: missing requirement [13.0] osgi.wiring.package; (&(osgi.wiring.package=org.apache.felix.gogo.commands)(version>=0.1
0.0)(!(version>=1.0.0))) [caused by: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.wirin
g.package=javax.security.auth)]
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.shell.packages [14] Error starting org/apache/karaf/shell/org.apache.karaf.shell.packages
/2.2.11/org.apache.karaf.shell.packages-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle
org.apache.karaf.shell.packages [14]: Unable to resolve 14.0: missing requirement [14.0] osgi.wiring.package; (&(osgi.wi
ring.package=org.apache.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 11.0: mi
ssing requirement [11.0] osgi.wiring.package; (osgi.wiring.package=javax.security.auth)])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.packages [14]: Unable to reso
lve 14.0: missing requirement [14.0] osgi.wiring.package; (&(osgi.wiring.package=org.apache.felix.gogo.commands)(version
>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.
wiring.package=javax.security.auth)]
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.shell.commands [15] Error starting org/apache/karaf/shell/org.apache.karaf.shell.commands
/2.2.11/org.apache.karaf.shell.commands-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle
org.apache.karaf.shell.commands [15]: Unable to resolve 15.0: missing requirement [15.0] osgi.wiring.package; (&(osgi.wi
ring.package=jline)(version>=2.9.0)(!(version>=3.0.0))) [caused by: Unable to resolve 11.0: missing requirement [11.0] o
sgi.wiring.package; (osgi.wiring.package=javax.security.auth)])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.commands [15]: Unable to reso
lve 15.0: missing requirement [15.0] osgi.wiring.package; (&(osgi.wiring.package=jline)(version>=2.9.0)(!(version>=3.0.0
))) [caused by: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.wiring.package=javax.secur
ity.auth)]
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.shell.dev [16] Error starting org/apache/karaf/shell/org.apache.karaf.shell.dev/2.2.11/or
g.apache.karaf.shell.dev-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.kara
f.shell.dev [16]: Unable to resolve 16.0: missing requirement [16.0] osgi.wiring.package; (osgi.wiring.package=javax.net
.ssl))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.dev [16]: Unable to resolve 1
6.0: missing requirement [16.0] osgi.wiring.package; (osgi.wiring.package=javax.net.ssl)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.jaas.config [17] Error starting org/apache/karaf/jaas/org.apache.karaf.jaas.config/2.2.11
/org.apache.karaf.jaas.config-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache
.karaf.jaas.config [17]: Unable to resolve 17.0: missing requirement [17.0] osgi.wiring.package; (osgi.wiring.package=ja
vax.net.ssl))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.config [17]: Unable to resolve
17.0: missing requirement [17.0] osgi.wiring.package; (osgi.wiring.package=javax.net.ssl)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.jaas.modules [18] Error starting org/apache/karaf/jaas/org.apache.karaf.jaas.modules/2.2.
11/org.apache.karaf.jaas.modules-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apa
che.karaf.jaas.modules [18]: Unable to resolve 18.0: missing requirement [18.0] osgi.wiring.package; (osgi.wiring.packag
e=javax.naming))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.modules [18]: Unable to resolv
e 18.0: missing requirement [18.0] osgi.wiring.package; (osgi.wiring.package=javax.naming)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.jaas.command [19] Error starting org/apache/karaf/jaas/org.apache.karaf.jaas.command/2.2.
11/org.apache.karaf.jaas.command-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apa
che.karaf.jaas.command [19]: Unable to resolve 19.0: missing requirement [19.0] osgi.wiring.package; (osgi.wiring.packag
e=javax.management))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.jaas.command [19]: Unable to resolv
e 19.0: missing requirement [19.0] osgi.wiring.package; (osgi.wiring.package=javax.management)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.features.core [20] Error starting org/apache/karaf/features/org.apache.karaf.features.cor
e/2.2.11/org.apache.karaf.features.core-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle
org.apache.karaf.features.core [20]: Unable to resolve 20.0: missing requirement [20.0] osgi.wiring.package; (osgi.wirin
g.package=javax.xml.parsers))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.features.core [20]: Unable to resol
ve 20.0: missing requirement [20.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.features.command [21] Error starting org/apache/karaf/features/org.apache.karaf.features.
command/2.2.11/org.apache.karaf.features.command-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint i
n bundle org.apache.karaf.features.command [21]: Unable to resolve 21.0: missing requirement [21.0] osgi.wiring.package;
(osgi.wiring.package=javax.management))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.features.command [21]: Unable to re
solve 21.0: missing requirement [21.0] osgi.wiring.package; (osgi.wiring.package=javax.management)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.diagnostic.common [23] Error starting org/apache/karaf/diagnostic/org.apache.karaf.diagno
stic.common/2.2.11/org.apache.karaf.diagnostic.common-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constra
int in bundle org.apache.karaf.diagnostic.common [23]: Unable to resolve 23.0: missing requirement [23.0] osgi.wiring.pa
ckage; (&(osgi.wiring.package=org.apache.karaf.features)(version>=2.2.0)(!(version>=3.0.0))) [caused by: Unable to resol
ve 20.0: missing requirement [20.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.diagnostic.common [23]: Unable to r
esolve 23.0: missing requirement [23.0] osgi.wiring.package; (&(osgi.wiring.package=org.apache.karaf.features)(version>=
2.2.0)(!(version>=3.0.0))) [caused by: Unable to resolve 20.0: missing requirement [20.0] osgi.wiring.package; (osgi.wir
ing.package=javax.xml.parsers)]
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.diagnostic.command [24] Error starting org/apache/karaf/diagnostic/org.apache.karaf.diagn
ostic.command/2.2.11/org.apache.karaf.diagnostic.command-2.2.11.jar (org.osgi.framework.BundleException: Unresolved cons
traint in bundle org.apache.karaf.diagnostic.command [24]: Unable to resolve 24.0: missing requirement [24.0] osgi.wirin
g.package; (&(osgi.wiring.package=org.apache.felix.gogo.commands)(version>=0.10.0)(!(version>=1.0.0))) [caused by: Unabl
e to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (osgi.wiring.package=javax.security.auth)])
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.diagnostic.command [24]: Unable to
resolve 24.0: missing requirement [24.0] osgi.wiring.package; (&(osgi.wiring.package=org.apache.felix.gogo.commands)(ver
sion>=0.10.0)(!(version>=1.0.0))) [caused by: Unable to resolve 11.0: missing requirement [11.0] osgi.wiring.package; (o
sgi.wiring.package=javax.security.auth)]
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.aries.jmx.api [25] Error starting org/apache/aries/jmx/org.apache.aries.jmx.api/0.3/org.apache.
aries.jmx.api-0.3.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.api [25]
: Unable to resolve 25.0: missing requirement [25.0] osgi.wiring.package; (osgi.wiring.package=javax.management.openmbea
n))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.api [25]: Unable to resolve 25.
0: missing requirement [25.0] osgi.wiring.package; (osgi.wiring.package=javax.management.openmbean)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.aries.jmx.core [26] Error starting org/apache/aries/jmx/org.apache.aries.jmx.core/0.3.1/org.apa
che.aries.jmx.core-0.3.1.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.c
ore [26]: Unable to resolve 26.0: missing requirement [26.0] osgi.wiring.package; (osgi.wiring.package=javax.management)
)
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.core [26]: Unable to resolve 26
.0: missing requirement [26.0] osgi.wiring.package; (osgi.wiring.package=javax.management)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.aries.jmx.blueprint [27] Error starting org/apache/aries/jmx/org.apache.aries.jmx.blueprint/0.3
/org.apache.aries.jmx.blueprint-0.3.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.
aries.jmx.blueprint [27]: Unable to resolve 27.0: missing requirement [27.0] osgi.wiring.package; (osgi.wiring.package=j
avax.management))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.aries.jmx.blueprint [27]: Unable to resol
ve 27.0: missing requirement [27.0] osgi.wiring.package; (osgi.wiring.package=javax.management)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.admin.core [28] Error starting org/apache/karaf/admin/org.apache.karaf.admin.core/2.2.11/
org.apache.karaf.admin.core-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.k
araf.admin.core [28]: Unable to resolve 28.0: missing requirement [28.0] osgi.wiring.package; (osgi.wiring.package=javax
.management))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.admin.core [28]: Unable to resolve
28.0: missing requirement [28.0] osgi.wiring.package; (osgi.wiring.package=javax.management)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.admin.command [29] Error starting org/apache/karaf/admin/org.apache.karaf.admin.command/2
.2.11/org.apache.karaf.admin.command-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org
.apache.karaf.admin.command [29]: Unable to resolve 29.0: missing requirement [29.0] osgi.wiring.package; (osgi.wiring.p
ackage=javax.management))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.admin.command [29]: Unable to resol
ve 29.0: missing requirement [29.0] osgi.wiring.package; (osgi.wiring.package=javax.management)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.mina.core [30] Error starting org/apache/mina/mina-core/2.0.5/mina-core-2.0.5.jar (org.osgi.fra
mework.BundleException: Unresolved constraint in bundle org.apache.mina.core [30]: Unable to resolve 30.0: missing requi
rement [30.0] osgi.wiring.package; (osgi.wiring.package=javax.crypto))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.mina.core [30]: Unable to resolve 30.0: m
issing requirement [30.0] osgi.wiring.package; (osgi.wiring.package=javax.crypto)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.sshd.core [31] Error starting org/apache/sshd/sshd-core/0.8.0/sshd-core-0.8.0.jar (org.osgi.fra
mework.BundleException: Unresolved constraint in bundle org.apache.sshd.core [31]: Unable to resolve 31.0: missing requi
rement [31.0] osgi.wiring.package; (osgi.wiring.package=javax.crypto))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.sshd.core [31]: Unable to resolve 31.0: m
issing requirement [31.0] osgi.wiring.package; (osgi.wiring.package=javax.crypto)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.shell.ssh [32] Error starting org/apache/karaf/shell/org.apache.karaf.shell.ssh/2.2.11/or
g.apache.karaf.shell.ssh-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.kara
f.shell.ssh [32]: Unable to resolve 32.0: missing requirement [32.0] osgi.wiring.package; (osgi.wiring.package=javax.sec
urity.auth))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.shell.ssh [32]: Unable to resolve 3
2.0: missing requirement [32.0] osgi.wiring.package; (osgi.wiring.package=javax.security.auth)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.deployer.features [35] Error starting org/apache/karaf/deployer/org.apache.karaf.deployer
.features/2.2.11/org.apache.karaf.deployer.features-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constrain
t in bundle org.apache.karaf.deployer.features [35]: Unable to resolve 35.0: missing requirement [35.0] osgi.wiring.pack
age; (osgi.wiring.package=javax.xml.parsers))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.features [35]: Unable to r
esolve 35.0: missing requirement [35.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
ERROR: Bundle org.apache.karaf.deployer.kar [36] Error starting org/apache/karaf/deployer/org.apache.karaf.deployer.kar/
2.2.11/org.apache.karaf.deployer.kar-2.2.11.jar (org.osgi.framework.BundleException: Unresolved constraint in bundle org
.apache.karaf.deployer.kar [36]: Unable to resolve 36.0: missing requirement [36.0] osgi.wiring.package; (osgi.wiring.pa
ckage=javax.xml.parsers))
org.osgi.framework.BundleException: Unresolved constraint in bundle org.apache.karaf.deployer.kar [36]: Unable to resolv
e 36.0: missing requirement [36.0] osgi.wiring.package; (osgi.wiring.package=javax.xml.parsers)
       at org.apache.felix.framework.Felix.resolveBundleRevision(Felix.java:3974)
       at org.apache.felix.framework.Felix.startBundle(Felix.java:2037)
       at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1291)
       at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:304)
       at java.lang.Thread.run(Thread.java:744)
Since I'm not able to run a new build of Cy3, is there an easy way I can get a zip of the cy3.1.1 release source code (github?)? I only need to debug the app manager on Cy 3.1.1 to see why my app doesn't show up in the app manger but runs fine.
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Okay, I think I found the source--would that be under https://github.com/cytoscape/cytoscape-impl/releases/tag/3.1.1?