Cytoscape 3.3.0
Hit '<tab>' for a list of available commands
and '[cmd] --help' for help on a specific command.
Hit '<ctrl-d>' or 'osgi:shutdown' to shutdown Cytoscape.
Cytoscape 3.3.0> usage: cytoscape.{sh|bat} [OPTIONS]
-h,--help Print this message.
-N,--network <file> Load a network file (any format).
-P,--props <file> Load cytoscape properties file (Java properties
format) or individual property: -P name=value.
-R,--rest <port> Start a rest service
-s,--session <file> Load a cytoscape session (.cys) file.
-S,--script <file> Execute commands from script file
-v,--version Print the version number.
-V,--vizmap <file> Load vizmap properties file (Cytoscape VizMap
format).
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.util.swing.IconManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheetItem.updateMappingIcon(VisualPropertySheetItem.java:789)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheetItem.getMappingBtn(VisualPropertySheetItem.java:603)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheetItem.getTopPnl(VisualPropertySheetItem.java:433)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheetItem.init(VisualPropertySheetItem.java:375)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheetItem.<init>(VisualPropertySheetItem.java:144)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator.createVisualPropertySheetItems(VizMapperMediator.java:968)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator.access$2500(VizMapperMediator.java:119)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$24.run(VizMapperMediator.java:890)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator.invokeOnEDT(VizMapperMediator.java:1433)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator.createVisualPropertySheets(VizMapperMediator.java:875)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator.updateVisualPropertySheets(VizMapperMediator.java:846)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator.access$200(VizMapperMediator.java:119)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:772)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 29 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.view.vizmap.VisualMappingManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.model.VizMapperProxy.getCurrentVisualStyle(VizMapperProxy.java:139)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$22.run(VizMapperMediator.java:770)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 18 more
Exception in thread "AWT-EventQueue-0" java.lang.RuntimeException: Couldn't find service: org.cytoscape.util.swing.IconManager
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:68)
at org.cytoscape.service.util.internal.CyServiceRegistrarImpl.getService(CyServiceRegistrarImpl.java:133)
at org.cytoscape.view.vizmap.gui.internal.util.ServicesUtil.get(ServicesUtil.java:31)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheet.getExpandAllBtn(VisualPropertySheet.java:381)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheet.getToolBarPnl(VisualPropertySheet.java:292)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheet.init(VisualPropertySheet.java:274)
at org.cytoscape.view.vizmap.gui.internal.view.VisualPropertySheet.<init>(VisualPropertySheet.java:105)
at org.cytoscape.view.vizmap.gui.internal.view.VizMapperMediator$24.run(VizMapperMediator.java:885)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)
at java.awt.EventQueue.access$500(EventQueue.java:97)
at java.awt.EventQueue$3.run(EventQueue.java:709)
at java.awt.EventQueue$3.run(EventQueue.java:703)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:80)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)
Caused by: java.lang.IllegalStateException: Invalid BundleContext.
at org.apache.felix.framework.BundleContextImpl.checkValidity(BundleContextImpl.java:514)
at org.apache.felix.framework.BundleContextImpl.getServiceReference(BundleContextImpl.java:358)
at org.cytoscape.service.util.internal.utils.ServiceUtil.getService(ServiceUtil.java:60)
... 21 more