RE: Cytoscape App Store - User Submitted Contact
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Barry Demchak
Nov 30, 2016, 10:03:03 AM11/30/16
to c.naveen...@yahoo.com, cytoscape...@googlegroups.com, Alexander Pico
Hi --
I am forwarding this to the Helpdesk, where it will get appropriate attention.
-----Original Message-----
From: cytoscape...@gmail.com [mailto:cytoscape...@gmail.com]
Sent: Tuesday, November 29, 2016 10:45 PM
To: alex...@gladstone.ucsf.edu; idekerlab...@gmail.com
Subject: Cytoscape App Store - User Submitted Contact
From: c.naveen...@yahoo.com
Myself Naveen prasanth from India, i am working on colletotrichum falcatum, a unique sugarcane stalk infecting fungal pathogen. I do have a genome and a three transcriptome data with us we would like to predict the differences among two strains using cytoscape, and also a high throughput data has been generated from a host-pathogen interaction. I have to predict protein-protein interaction to find out the genes involved in pathogenesis and host defense mechanisms, etc. To take up this analysis, should i have to load my data in our databases ? I am really in need of cytoscape to decipher lot of genes involved in many process. Kindly guide me or help me
I am forwarding this to the Helpdesk, where it will get appropriate attention.
-----Original Message-----
From: cytoscape...@gmail.com [mailto:cytoscape...@gmail.com]
Sent: Tuesday, November 29, 2016 10:45 PM
To: alex...@gladstone.ucsf.edu; idekerlab...@gmail.com
Subject: Cytoscape App Store - User Submitted Contact
From: c.naveen...@yahoo.com
Myself Naveen prasanth from India, i am working on colletotrichum falcatum, a unique sugarcane stalk infecting fungal pathogen. I do have a genome and a three transcriptome data with us we would like to predict the differences among two strains using cytoscape, and also a high throughput data has been generated from a host-pathogen interaction. I have to predict protein-protein interaction to find out the genes involved in pathogenesis and host defense mechanisms, etc. To take up this analysis, should i have to load my data in our databases ? I am really in need of cytoscape to decipher lot of genes involved in many process. Kindly guide me or help me
alex.pico
Dec 1, 2016, 4:10:19 PM12/1/16
to cytoscape-helpdesk, c.naveen...@yahoo.com, alex...@gladstone.ucsf.edu
Hi Naveen,
This sounds like a major project. This is not an easy question to answer from the perspective of 'how to use Cytoscape'. This is more of a question about how to perform a complex analysis... that may end up using Cytoscape.
I would recommend trying to post this on BioStars or seeking help from contacts or mailing lists with general bioinformaticians or data analysts.
I'm not sure there is a Cytoscape answer to this question.
- Alex
This sounds like a major project. This is not an easy question to answer from the perspective of 'how to use Cytoscape'. This is more of a question about how to perform a complex analysis... that may end up using Cytoscape.
I would recommend trying to post this on BioStars or seeking help from contacts or mailing lists with general bioinformaticians or data analysts.
I'm not sure there is a Cytoscape answer to this question.
- Alex
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