Visualize clusters in my network

[Sidwell Rigade]

Hi everyone,

I have a network in .gml format : look like this :

I used a program to clusterize my network and I want to visualize in cytoscape these clusters.

I added the information in my .gml file but i can't access to this information in cytoscape.

Is there any way to add the information in my visualization or have I to do it by hand ?

Thanks a lot for any help,

Sidwell

[Ruth Isserlin]

Hi Sidwell, 

If you have the cluster information as a tab delimited file you can easily load it in as a node attribute. 

With a file with two columns:

label (tab) cluster

http://wiki.cytoscape.org/Cytoscape_3/UserManual#Cytoscape_3.2BAC8-UserManual.2BAC8-Columns.Import_Data_Table_Files

Once the cluster number is specified for each node you can visualize the clusters but adding a color to you visual style, a different node color for each cluster. 

http://wiki.cytoscape.org/Cytoscape_3/UserManual#Cytoscape_3.2BAC8-UserManual.2BAC8-Styles.Tutorial_2:_Creating_a_New_Style_with_a_Discrete_Mapping

Thanks, 

Ruth 

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[Sidwell Rigade]

Thank you very much for your help !