Data structure in galExpData.csv?

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Nesha Hollman

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Nov 29, 2017, 9:39:55 AM11/29/17
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Hello,

I am interested in importing expression data into Cytoscape. I initially used the tutorial and the sample data file, galExpData.csv, will someone please explain the data structure? How did you all obtain the values for the expression (i.e. gal1Rexp values) and the significance (i.e. gal1Rsig values)?

Thank you,

Nesha

Barry Demchak

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Nov 29, 2017, 11:22:32 AM11/29/17
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Hi –

 

This network derives from a 2001 paper: https://www.ncbi.nlm.nih.gov/pubmed/?term=11340206

 

The galExpData.csv file follows standard CSV format (https://en.wikipedia.org/wiki/Comma-separated_values), so each line encodes a row of data on a spreadsheet, and the first line encodes the column names. For example, each line contains a GENE, COMMON, gal1RGexp … value, separated by commas.

 

Does this help?

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Nesha Hollman

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Dec 1, 2017, 5:49:06 PM12/1/17
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Thank you so much! I am unsure if it helps but when I get a chance I will view it and let you know.

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On Wed, Nov 29, 2017 at 10:21 AM, Barry Demchak <idekerlab...@gmail.com> wrote:

Hi –

 

This network derives from a 2001 paper: https://www.ncbi.nlm.nih.gov/pubmed/?term=11340206

 

The galExpData.csv file follows standard CSV format (https://en.wikipedia.org/wiki/Comma-separated_values), so each line encodes a row of data on a spreadsheet, and the first line encodes the column names. For example, each line contains a GENE, COMMON, gal1RGexp … value, separated by commas.

 

Does this help?

 

From: cytoscape-helpdesk@googlegroups.com [mailto:cytoscape-helpdesk@googlegroups.com] On Behalf Of Nesha Hollman
Sent: Wednesday, November 29, 2017 6:40 AM
To: cytoscape-helpdesk <cytoscape-helpdesk@googlegroups.com>
Subject: [cytoscape-helpdesk] Data structure in galExpData.csv?

 

Hello,

I am interested in importing expression data into Cytoscape. I initially used the tutorial and the sample data file, galExpData.csv, will someone please explain the data structure? How did you all obtain the values for the expression (i.e. gal1Rexp values) and the significance (i.e. gal1Rsig values)?

Thank you,

Nesha

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Ms. Antoinesha Hollman
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Environmental Science PhD Fellow
Jackson State University
 
 
 

“Don’t be in a hurry to condemn because he doesn’t do what you do or think as you think or as fast. There was a time when you didn’t know what you know today.” — Malcolm X
 

Nesha Hollman

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Dec 7, 2017, 3:49:39 PM12/7/17
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It somewhat helped but what I was looking for is in the Integration of Biological Networks and Gene Expression Data using Cytoscape. Thank you so much for your help.

Virus-free. www.avast.com

On Wed, Nov 29, 2017 at 10:21 AM, Barry Demchak <idekerlab...@gmail.com> wrote:

Hi –

 

This network derives from a 2001 paper: https://www.ncbi.nlm.nih.gov/pubmed/?term=11340206

 

The galExpData.csv file follows standard CSV format (https://en.wikipedia.org/wiki/Comma-separated_values), so each line encodes a row of data on a spreadsheet, and the first line encodes the column names. For example, each line contains a GENE, COMMON, gal1RGexp … value, separated by commas.

 

Does this help?

 

From: cytoscape-helpdesk@googlegroups.com [mailto:cytoscape-helpdesk@googlegroups.com] On Behalf Of Nesha Hollman
Sent: Wednesday, November 29, 2017 6:40 AM
To: cytoscape-helpdesk <cytoscape-helpdesk@googlegroups.com>
Subject: [cytoscape-helpdesk] Data structure in galExpData.csv?

 

Hello,

I am interested in importing expression data into Cytoscape. I initially used the tutorial and the sample data file, galExpData.csv, will someone please explain the data structure? How did you all obtain the values for the expression (i.e. gal1Rexp values) and the significance (i.e. gal1Rsig values)?

Thank you,

Nesha

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