Filtering nodes

[Martin Forde]

Hi,

i have a ClueGO network diagram with ~1000 nodes, and I'd like to filter out a lot of these by GO ID. For example, I only have maybe 80 nodes that I'm interested in and I know there IDs. How do I go about getting rid of the misc. nodes I don't want? I don't see a function within the gui. Maybe there's something I can do within the session files themselves? Maybe delete non-matching GO ID from a node table? Any suggestions?

Martin

[piet molenaar]

Hi Martin,

You can use the filter functionality to select for specific attribute values for either nodes or edges.

See here: http://manual.cytoscape.org/en/stable/Finding_and_Filtering_Nodes_and_Edges.html#filters

and a tutorial here: http://opentutorials.cgl.ucsf.edu/index.php/Tutorial:Filtering_and_Editing_in_Cytoscape_3

After you've selected the set you're interested in you can create a new network from that; CTRL+N

Hope this helps,

Piet

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Piet Molenaar
piet...@gmail.com
Department of Oncogenomics, M1-131
Academic Medical Center
University of Amsterdam
Meibergdreef 9
1105 AZ Amsterdam
the Netherlands

tel (+31) 20-5666592
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