KEGG ID to Gene symbol convertion

[Sander]

Hi guys,

I would like to convert KEGG IDs (eg. K00031) to gene symbols (and/or enzymatic reaction codes) so I can basically map fold changes (extracted from an ANOVA model) of enzymatic reaction-related genes onto pathways without the hassle of figuring out which KEGG ID relates to which Gene symbols manually.

Is there an way in cytoscape to do so?

Thanks a bunch for answering!!!

Best,

Sander  

[piet molenaar]

Hi Sander,

From the specs the cytokegg app should help you out here: http://apps.cytoscape.org/apps/cytokegg

Also the CyKeggParser provides better annotation of the nodes http://apps.cytoscape.org/apps/cykeggparser

Hope this helps,

Piet

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Piet Molenaar
piet...@gmail.com
Department of Oncogenomics, M1-131
Academic Medical Center
University of Amsterdam
Meibergdreef 9
1105 AZ Amsterdam
the Netherlands

tel (+31) 20-5666592
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[Sander Tuit]

Hi Piet,

Thanks a lot. I will check it out!

Best,

Sander

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