Node interactions table export from network

[hukar...@gmail.com]

Hello,I have a huge network and for some calculations I need a table which shows nodes and their connected nodes. I only need these two properties.

How can I export a table which includes this information. When I export table I cannot see the nodes and their connected nodes.

Thank you.

[Barry Demchak]

Hi –

 

It seems you have a few choices.

 

The first one is to export the edge table as a CSV. This shows all edges, nodes on the edges, interaction types, and so on. Here’s an example from the sample galFiltered network (using File | Export | Table):

 

"SUID","EdgeBetweenness","interaction","name","selected","shared interaction","shared name"

"4752","496.0","pp","YKR026C (pp) YGL122C","false","pp","YKR026C (pp) YGL122C"

"4753","988.0","pp","YGL122C (pp) YOL123W","false","pp","YGL122C (pp) YOL123W"

 

The simpler way is to export the network as a SIF file (using File | Export | Network), which shows source node, interaction and target node:

 

YDR277C              pp           YDL194W

YDR277C              pp           YJR022W

YPR145W             pp           YMR117C

YER054C               pp           YBR045C

YER054C               pp           YER133W

YBR045C               pp           YOR178C

YBR045C               pp           YIL045W

 

Does this help?

--
You received this message because you are subscribed to the Google Groups "cytoscape-helpdesk" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cytoscape-helpd...@googlegroups.com.
To post to this group, send email to cytoscape...@googlegroups.com.
Visit this group at https://groups.google.com/group/cytoscape-helpdesk.
To view this discussion on the web visit https://groups.google.com/d/msgid/cytoscape-helpdesk/b5ad5dee-74fb-4cb9-9de4-368f75371721%40googlegroups.com.
For more options, visit https://groups.google.com/d/optout.