So I think I have a better idea what is causing the bumps and squiggles. I think this is caused by vibration of the frame and extruder while printing.
Slowing things down reduced the vibration and resulted in a smoother print but its not quite perfect.
I think there are a few causes:
1) I'm using the rectilinear infill with slic3r
2) The z rods are not stable enough
going to work on a few things but I think that is my main issue - vibration and wobble so thats my next focus. I'm also noticing some small gaps between the perimeter and the infill. Looking at the slic3r help page and forum threads, slic3r itself may be to blame ( at least partially, not exclusively - could be fill rate but I think I have that about dialed in now )