Failing in installing bob.bio packages.

[Jinfang Wang]

I am installing bob.bio packages after setting up the python environment according to the command sequence,

$ pip search bob.bio

$ pip install bob.bio.base

But failed with the following message. Could you tell how to solve the problem?

=================================================================

root@hunfoo:/home/jfw/AnacondaProjects# pip install bob.bio.base

Collecting bob.bio.base

  Using cached bob.bio.base-3.1.0.zip

Collecting bob.blitz (from bob.bio.base)

  Using cached bob.blitz-2.0.12.zip

    Complete output from command python setup.py egg_info:

    

    Installed /tmp/pip-build-Rj2zHg/bob.blitz/.eggs/bob.extension-2.3.11-py2.7.egg

    Traceback (most recent call last):

      File "<string>", line 1, in <module>

      File "/tmp/pip-build-Rj2zHg/bob.blitz/setup.py", line 70, in <module>

        system_include_dirs=system_include_dirs,

      File "/tmp/pip-build-Rj2zHg/bob.blitz/.eggs/bob.extension-2.3.11-py2.7.egg/bob/extension/__init__.py", line 356, in __init__

        boost_pkg = boost(boost_req.replace('boost', '').strip())

      File "/tmp/pip-build-Rj2zHg/bob.blitz/.eggs/bob.extension-2.3.11-py2.7.egg/bob/extension/boost.py", line 69, in __init__

        raise RuntimeError("could not find boost's `version.hpp' - have you installed Boost on this machine?")

    RuntimeError: could not find boost's `version.hpp' - have you installed Boost on this machine?

    

    ----------------------------------------

Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-Rj2zHg/bob.blitz/

=================================================================

Thank you.

[Amir Mohammadi]

You need to install bob first.

conda install bob

Try to read and follow bob installation instructions first.

Best,
Amir

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[Jinfang Wang]

Thank you for the advice.

I use the command,"pip search bob.bio", to list the related packages and install bob.bio.spear和bob.bio.gmm by the command"pip install ...". Could you tell me whether there is a test script to verify the installation? Concretely, run the script running a testing for each of the bob.bio packages?

Again thanks.

[Amir Mohammadi]

Hi,

You need to install nose:

conda install nose

Then, you can run the nosetests like:

nosetestes -sv bob.bio

Let me know if it works.

Thanks,

Amir

--

[Jinfang Wang]

(bob_py27) root@hunfoo:/home/jfw# pip search bob.bio

bob.bio.base (3.1.0)                      - Tools for running biometric recognition experiments

  INSTALLED: 3.1.0 (latest)

bob.bio.caffe_face (1.0.0)                - Tools for running face recognition experiments using VGG face model

bob.bio.csu (2.0.4)                       - Wrapper classes to use the PythonFaceEvaluation classes from the CSU Face Recognition Resources

bob.bio.face (3.1.0)                      - Tools for running face recognition experiments

bob.bio.gmm (3.0.1)                       - Tools for running biometric recognition experiments using GMM-based approximation

  INSTALLED: 3.0.1 (latest)

bob.bio.pericrosseye_competition (1.0.2)  - This package contains the scripts to reproduce the experiments of the 2nd Cross-Spectrum

                                            Iris/Periocular Recognition competition

bob.bio.spear (3.0.1)                     - Tools for running speaker recognition experiments

  INSTALLED: 3.0.1 (latest)

bob.bio.video (3.1.0)                     - Run biometric recognition algorithms on videos

-------------------------------------The following is the results by running nosetests------------------------------

(bob_py27) root@hunfoo:/home/jfw# nosetests -sv bob.bio

bob.bio.base@2017-05-16 16:16:23,400 -- WARNING: Downloading the AT&T database from 'http://www.cl.cam.ac.uk/Research/DTG/attarchive/pub/data/att_faces.zip' to '/tmp/atnt_db_FSv6g4' ...

bob.bio.base@2017-05-16 16:16:23,401 -- WARNING: To avoid this, please download the database manually, extract the data and set the ATNT_DATABASE_DIRECTORY environment variable to this directory.

bob.bio.base.test.test_algorithms.test_pca ... bob.bio.base@2017-05-16 16:16:36,596 -- INFO:   -> Training LinearMachine using PCA

bob.bio.base@2017-05-16 16:16:37,152 -- INFO:     ... Keeping 5 PCA dimensions

bob.bio.base@2017-05-16 16:16:37,259 -- INFO:   -> Training LinearMachine using PCA

bob.bio.base@2017-05-16 16:16:37,309 -- INFO:     ... Keeping 140 PCA dimensions

ok

bob.bio.base.test.test_algorithms.test_lda ... bob.bio.base@2017-05-16 16:16:37,352 -- INFO:   -> Training Linear Machine using PCA

bob.bio.base@2017-05-16 16:16:37,394 -- INFO:   ... Limiting PCA subspace to 10 dimensions

bob.bio.base@2017-05-16 16:16:37,395 -- INFO:   -> Projecting training data to PCA subspace

bob.bio.base@2017-05-16 16:16:37,397 -- INFO:   -> Training Linear Machine using LDA

bob.bio.base@2017-05-16 16:16:37,455 -- INFO:   -> Training Linear Machine using PCA

bob.bio.base@2017-05-16 16:16:37,503 -- INFO:   ... Limiting PCA subspace to 132 dimensions

bob.bio.base@2017-05-16 16:16:37,503 -- INFO:   -> Projecting training data to PCA subspace

bob.bio.base@2017-05-16 16:16:37,533 -- INFO:   -> Training Linear Machine using LDA

ok

bob.bio.base.test.test_algorithms.test_distance ... ok

bob.bio.base.test.test_algorithms.test_bic ... bob.bio.base@2017-05-16 16:16:37,637 -- INFO:   -> Computing pairs

bob.bio.base@2017-05-16 16:16:37,642 -- INFO:   -> Limiting intrapersonal pairs from 450 to 100

bob.bio.base@2017-05-16 16:16:37,643 -- INFO:   -> Limiting extrapersonal pairs from 4500 to 100

bob.bio.base@2017-05-16 16:16:37,643 -- INFO:   -> Computing 100 intrapersonal results

bob.bio.base@2017-05-16 16:16:37,644 -- INFO:   -> Computing 100 extrapersonal results

bob.bio.base@2017-05-16 16:16:37,644 -- INFO:   -> Training BIC machine

bob.bio.base@2017-05-16 16:16:37,674 -- INFO:   -> Computing pairs

bob.bio.base@2017-05-16 16:16:37,674 -- INFO:   -> Limiting intrapersonal pairs from 450 to 100

bob.bio.base@2017-05-16 16:16:37,675 -- INFO:   -> Limiting extrapersonal pairs from 4500 to 100

bob.bio.base@2017-05-16 16:16:37,679 -- INFO:   -> Computing 100 intrapersonal results

bob.bio.base@2017-05-16 16:16:37,679 -- INFO:   -> Computing 100 extrapersonal results

bob.bio.base@2017-05-16 16:16:37,679 -- INFO:   -> Training BIC machine

ok

bob.bio.base.test.test_algorithms.test_plda ... bob.bio.base@2017-05-16 16:16:37,729 -- INFO:   -> Training LinearMachine using PCA 

bob.bio.base@2017-05-16 16:16:37,775 -- INFO:   -> limiting PCA subspace to 10 dimensions

bob.bio.base@2017-05-16 16:16:37,776 -- INFO:   -> Training PLDA base machine

bob.learn.em@2017-05-16 16:16:37,784 -- INFO: Iteration = 0/1

ok

bob.bio.base.test.test_algorithms.test_plda_nopca ... bob.bio.base@2017-05-16 16:16:37,836 -- INFO:   -> Training PLDA base machine

bob.learn.em@2017-05-16 16:16:37,887 -- INFO: Iteration = 0/1

ok

bob.bio.base.test.test_config_file.test_basic ... ok

bob.bio.base.test.test_config_file.test_compare_to_cmdline_basic ... ok

bob.bio.base.test.test_config_file.test_compare_to_cmdline_resources ... ok

bob.bio.base.test.test_config_file.test_compare_to_cmdline_skip ... ok

bob.bio.base.test.test_config_file.test_from_resource ... ok

bob.bio.base.test.test_config_file.test_from_module ... ok

bob.bio.base.test.test_config_file.test_order ... ok

bob.bio.base.test.test_config_file.test_order_inverse ... ok

bob.bio.base.test.test_extractor.test_linearize ... ok

bob.bio.base.test.test_filelist.test_query ... ok

bob.bio.base.test.test_filelist.test_query_protocol ... ok

bob.bio.base.test.test_filelist.test_query_dense ... ok

bob.bio.base.test.test_filelist.test_annotation ... ok

bob.bio.base.test.test_filelist.test_multiple_extensions ... ok

bob.bio.base.test.test_filelist.test_driver_api ... ok

bob.bio.base.test.test_preprocessor.test_filename ... ok

bob.bio.base.test.test_scripts.test_grid_search ... SKIP: Skipping test since gridtk is not available: No module named gridtk

bob.bio.base.test.test_scripts.test_verify_parallel ... SKIP: Skipping test since gridtk is not available: No module named gridtk

bob.bio.base.test.test_scripts.test_verify_config ... ok

bob.bio.base.test.test_scripts.test_verify_algorithm_noprojection ... ok

bob.bio.base.test.test_scripts.test_verify_resources ... ok

bob.bio.base.test.test_scripts.test_verify_commandline ... ok

bob.bio.base.test.test_scripts.test_verify_compressed ... ok

bob.bio.base.test.test_scripts.test_verify_calibrate ... ok

bob.bio.base.test.test_scripts.test_verify_fileset ... ok

bob.bio.base.test.test_scripts.test_verify_filelist ... ok

bob.bio.base.test.test_scripts.test_verify_missing ... bob.bio.base@2017-05-16 16:17:11,440 -- ERROR: There are NaN scores inside one of the score files for group dev; ZT-Norm will not work

ok

bob.bio.base.test.test_scripts.test_verify_execute_only ... Would have executed task 'preprocess' with no parameters

Would have executed task 'compute-scores' with group='dev' and score-type='A' 

Would have executed task 'compute-scores' with group='dev' and score-type='B' 

Would have executed task 'compute-scores' with group='dev' and score-type='C' 

Would have executed task 'compute-scores' with group='dev' and score-type='D' 

Would have executed task 'compute-scores' with group='dev' and score-type='Z' 

ok

bob.bio.base.test.test_scripts.test_internal_raises ... bob.bio.base@2017-05-16 16:17:11,605 -- ERROR: During the execution, an exception was raised: The option --group is an internal option and cannot be used to define experiments; did you mean to use --groups?

bob.bio.base@2017-05-16 16:17:11,637 -- ERROR: During the execution, an exception was raised: The option --model-type is an internal option and cannot be used to define experiments

bob.bio.base@2017-05-16 16:17:11,675 -- ERROR: During the execution, an exception was raised: The option --score-type is an internal option and cannot be used to define experiments

ok

bob.bio.base.test.test_scripts.test_fusion ... ok

bob.bio.base.test.test_scripts.test_evaluate ... /usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/matplotlib/font_manager.py:280: UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment.

  'Matplotlib is building the font cache using fc-list. '

The HTER of the development set of 'no norm' is 50.000%

The HTER of the evaluation set of 'no norm' is 50.000%

The HTER of the development set of 'ZT norm' is 50.000%

The HTER of the evaluation set of 'ZT norm' is 50.000%

sh: latex: 未找到命令

ERROR

bob.bio.base.test.test_scripts.test_resources ... ok

bob.bio.base.test.test_scripts.test_collect_results ... ok

bob.bio.base.test.test_scripts.test_scripts ... ok

bob.bio.base.test.test_tools.test_file_selector ... ok

bob.bio.base.test.test_utils.test_resources ... ok

bob.bio.base.test.test_utils.test_grid ... bob.bio.base@2017-05-16 16:17:38,334 -- WARNING: Under the desired name 'demanding', there are multiple entry points defined, we return the first one: ['bob.bio.base.config.grid.demanding', 'bob.bio.spear.config.grid.demanding']

ok

bob.bio.base.test.test_utils.test_io ... ok

bob.bio.base.test.test_utils.test_sampling ... ok

bob.bio.gmm.test.test_algorithms.test_gmm ... ok

bob.bio.gmm.test.test_algorithms.test_gmm_regular ... ok

bob.bio.gmm.test.test_algorithms.test_isv ... ok

bob.bio.gmm.test.test_algorithms.test_jfa ... ok

bob.bio.gmm.test.test_algorithms.test_ivector_cosine ... ok

bob.bio.gmm.test.test_algorithms.test_ivector_plda ... ok

bob.bio.gmm.test.test_algorithms.test_ivector_lda_wccn_plda ... ok

bob.bio.gmm.test.test_scripts.test_gmm_parallel ... SKIP: Skipping test since gridtk is not available: No module named gridtk

bob.bio.gmm.test.test_scripts.test_isv_parallel ... SKIP: Skipping test since gridtk is not available: No module named gridtk

bob.bio.gmm.test.test_scripts.test_ivector_cosine_parallel ... SKIP: Skipping test since gridtk is not available: No module named gridtk

bob.bio.gmm.test.test_scripts.test_ivector_lda_wccn_plda_parallel ... SKIP: Skipping test since gridtk is not available: No module named gridtk

bob.bio.gmm.test.test_scripts.test_gmm_sequential ... ok

bob.bio.gmm.test.test_scripts.test_isv_sequential ... ok

bob.bio.gmm.test.test_scripts.test_ivector_cosine_sequential ... ok

bob.bio.gmm.test.test_scripts.test_ivector_lda_wccn_plda_sequential ... ok

bob.bio.gmm.test.test_scripts.test_internal_raises ... bob.bio.gmm@2017-05-16 16:17:57,409 -- ERROR: During the execution, an exception was raised: The option --iteration is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-05-16 16:17:57,433 -- ERROR: During the execution, an exception was raised: The option --group is an internal option and cannot be used to define experiments; did you mean to use --groups?

bob.bio.gmm@2017-05-16 16:17:57,468 -- ERROR: During the execution, an exception was raised: The option --model-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-05-16 16:17:57,504 -- ERROR: During the execution, an exception was raised: The option --score-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-05-16 16:17:57,541 -- ERROR: During the execution, an exception was raised: The option --iteration is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-05-16 16:17:57,576 -- ERROR: During the execution, an exception was raised: The option --group is an internal option and cannot be used to define experiments; did you mean to use --groups?

bob.bio.gmm@2017-05-16 16:17:57,612 -- ERROR: During the execution, an exception was raised: The option --model-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-05-16 16:17:57,653 -- ERROR: During the execution, an exception was raised: The option --score-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-05-16 16:17:57,678 -- ERROR: During the execution, an exception was raised: The option --iteration is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-05-16 16:17:57,709 -- ERROR: During the execution, an exception was raised: The option --group is an internal option and cannot be used to define experiments; did you mean to use --groups?

bob.bio.gmm@2017-05-16 16:17:57,749 -- ERROR: During the execution, an exception was raised: The option --model-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-05-16 16:17:57,778 -- ERROR: During the execution, an exception was raised: The option --score-type is an internal option and cannot be used to define experiments

ok

bob.bio.spear.test.test_databases.test_asvspoof_licit ... SKIP: Skipping test since the database bob.db.asvspoof seems not to be available: No module named asvspoof

bob.bio.spear.test.test_databases.test_asvspoof_spoof ... SKIP: Skipping test since the database bob.db.asvspoof seems not to be available: No module named asvspoof

bob.bio.spear.test.test_databases.test_avspoof_licit ... SKIP: Skipping test since the database bob.db.avspoof seems not to be available: No module named avspoof

bob.bio.spear.test.test_databases.test_avspoof_spoof ... SKIP: Skipping test since the database bob.db.avspoof seems not to be available: No module named avspoof

bob.bio.spear.test.test_databases.test_mobio ... SKIP: Skipping test since the database bob.db.mobio seems not to be available: No module named mobio

bob.bio.spear.test.test_databases.test_voicepa_licit ... SKIP: Skipping test since the database bob.db.voicepa seems not to be available: No module named voicepa

bob.bio.spear.test.test_databases.test_voicepa_spoof ... SKIP: Skipping test since the database bob.db.voicepa seems not to be available: No module named voicepa

bob.bio.spear.test.test_databases.test_timit ... ok

bob.bio.spear.test.test_databases.test_banca ... ok

bob.bio.spear.test.test_extractors.test_mfcc ... bob.bio.spear@2017-05-16 16:17:58,309 -- INFO: After 2 Gaussian Energy-based VAD there are 370 frames remaining over 485

ok

bob.bio.spear.test.test_extractors.test_lfcc ... bob.bio.spear@2017-05-16 16:17:58,577 -- INFO: After 2 Gaussian Energy-based VAD there are 370 frames remaining over 485

ok

bob.bio.spear.test.test_preprocessors.test_energy_2gauss ... bob.bio.spear@2017-05-16 16:17:58,845 -- INFO: After 2 Gaussian Energy-based VAD there are 370 frames remaining over 485

ok

bob.bio.spear.test.test_preprocessors.test_energy_thr ... bob.bio.spear@2017-05-16 16:17:58,900 -- INFO: After thresholded Energy-based VAD there are 165 frames remaining over 485

ok

bob.bio.spear.test.test_preprocessors.test_mod_4hz ... bob.bio.spear@2017-05-16 16:17:58,981 -- INFO: After Mod-4Hz based VAD there are 263 frames remaining over 485

ok

======================================================================

ERROR: bob.bio.base.test.test_scripts.test_evaluate

----------------------------------------------------------------------

Traceback (most recent call last):

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/nose/case.py", line 197, in runTest

    self.test(*self.arg)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/test/test_scripts.py", line 400, in test_evaluate

    main(parameters)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/evaluate.py", line 282, in main

    raise RuntimeError("During plotting of ROC curves, the following exception occured:\n%s\nUsually this happens when the label contains characters that LaTeX cannot parse." % e)

RuntimeError: During plotting of ROC curves, the following exception occured:

LaTeX was not able to process the following string:

'lp'

Here is the full report generated by LaTeX: 

Usually this happens when the label contains characters that LaTeX cannot parse.

----------------------------------------------------------------------

Ran 75 tests in 82.622s

FAILED (SKIP=13, errors=1)

----------------------------------------------------------------------------------------------------------------

Hi, Amir,

How can I do? Please give me some advice. Thank you.

[Amir Mohammadi]

Hi,

Your installation is working. It's ok if some of the tests are failing. (You don't have latex installed).

You can continue using the packages.

Best,
Amir

--

[Manuel Günther]

Dear Jinfang,

indeed, the installation works fine. Note, however, that you'll need to have latex installed in order to generate plots (i.e, using evaluate.py).

@amir: how difficult is it to add latex to the requirements in the CONDA installation? Is it possible at all? Could you do that, so that installing bob packages automatically installs latex?

Manuel

[Amir Mohammadi]

Hi Manuel,

Latex is very difficult to package through conda. I don't think it will be available anytime soon.

Best,
Amir

--

[Jinfang Wang]

Thanks for Amir and Manuel's guidance.

Although I have read the related functions of trainers and machines for speaker recognition carefully, I can't form a complete implementation flow until now. Could you tell me whether there is a complete example? Where can I find it? Because I have just touched Anaconda, bob.bio.spear is seemingly lost in the directory. I'm so sorry for such an ignorant question.

Again thanks.

[Amir Mohammadi]

Hi,

You can start by reading the documentation of bob.bio.base. Please let us know if you have more questions after.

Thanks,
Amir

--

[Jinfang Wang]

Hi,

I am trying to understand verify.py by spyder. But when executing the line of "from bob.bio.base.script.verify import main", "ImportError: 'No module named bob.bio.base.script.verify'" occurred. Could you give me some advice on it?

Thank you.

[Amir Mohammadi]

Hi,

You are running the script with Python from your root environment probably while bob.bio.base is installed in your bob_py27 environment.

Your problem is very basic. Try to ask a friend who has some experience working with Python to help you if you are stuck.

Best,
Amir

[Manuel Günther]

Indeed, you have to tell spyder, where the bob packages are installed. The easiest way, IMHO, would be to start spyder from the command line, i.e., after activating the conda environment:

$ conda activate bob_py27 # or whatever your conda environment is
$ spyder <file_to_open>.py

There might be other ways, e.g., defining the PYTHONPATH=/usr/local/anaconda2/evns/bob_py27 variable inside spyder, but I have never used spyder myself, so I cannot tell you, how to do that.

Anyways, running `verify.py` inside spider might not be the best choice -- this has not been tested by us. Running it on the command line for sure works.

Manuel

[Jinfang Wang]

Hi,

Thank you for your advice about Spyder.

1) I ran databases.py for a list of known databases. But "TypeError: object.__init__() takes no parameters" occurred. I guess that there is something wrong with the contents or format of "~/.bob_bio_databases.txt". The downloaded Voxforge database is put into the directory,"/media/sf_winshare/Voxforge_bob_bio_spear".

2) I also attempted to run the command, "verify.py -d voxforge -p energy-2gauss -e mfcc-60 -a gmm-voxforge -s ubm_gmm --groups {dev,eval}" but without success.

Could you give me some advice?

Again thanks.

-------------------------------------------------------------

(bob_py27) jfw@hunfoo:/usr/local/anaconda2/envs/bob_py27/bin$ cat ~/.bob_bio_databases.txt

[YOUR_ATNT_DIRECTORY] = /media/sf_winshare/Voxforge_bob_bio_spear

(bob_py27) jfw@hunfoo:/usr/local/anaconda2/envs/bob_py27/bin$ databases.py

Traceback (most recent call last):

  File "/usr/local/anaconda2/envs/bob_py27/bin/databases.py", line 6, in <module>

    sys.exit(bob.bio.base.script.resources.databases())

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/resources.py", line 66, in databases

    databases = bob.bio.base.utils.resources.database_directories(replacements=args.database_directories_file)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/utils/resources.py", line 284, in database_directories

    db = load_resource(entry_point.name, 'database')

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/utils/resources.py", line 180, in load_resource

    return entry_points[0].load()

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/setuptools-27.2.0-py2.7.egg/pkg_resources/__init__.py", line 2258, in load

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/setuptools-27.2.0-py2.7.egg/pkg_resources/__init__.py", line 2264, in resolve

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/spear/config/database/asvspoof.py", line 15, in <module>

    training_depends_on_protocol=True,

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/spear/database/asvspoof.py", line 35, in __init__

    super(ASVspoofBioDatabase, self).__init__(name='asvspoof', **kwargs)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/database/database.py", line 93, in __init__

    original_extension=original_extension)

TypeError: object.__init__() takes no parameters

(bob_py27) jfw@hunfoo:/usr/local/anaconda2/envs/bob_py27/bin$ verify.py -d voxforge -p energy-2gauss -e mfcc-60 -a gmm-voxforge -s ubm_gmm --groups {dev,eval}

bob.bio.base@2017-05-31 16:11:02,332 -- ERROR: During the execution, an exception was raised: object.__init__() takes no parameters

Traceback (most recent call last):

  File "/usr/local/anaconda2/envs/bob_py27/bin/verify.py", line 6, in <module>

    sys.exit(bob.bio.base.script.verify.main())

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/verify.py", line 451, in main

    args = parse_arguments(command_line_parameters)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/verify.py", line 34, in parse_arguments

    skips = ['preprocessing', 'extractor-training', 'extraction', 'projector-training', 'projection', 'enroller-training', 'enrollment', 'score-computation', 'concatenation', 'calibration'])

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/tools/command_line.py", line 422, in initialize

    args = parse_config_file(parsers, args, args_dictionary, keywords, skips)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/tools/command_line.py", line 291, in parse_config_file

    parser.get_default(keyword))

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/tools/command_line.py", line 239, in take_from_config_or_command_line

    preferred_package=args.preferred_package))

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/utils/resources.py", line 180, in load_resource

    return entry_points[0].load()

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/setuptools-27.2.0-py2.7.egg/pkg_resources/__init__.py", line 2258, in load

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/setuptools-27.2.0-py2.7.egg/pkg_resources/__init__.py", line 2264, in resolve

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/db/voxforge/config.py", line 9, in <module>

    original_extension=".wav",

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/db/voxforge/query.py", line 35, in __init__

    original_extension=original_extension)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/database/filelist/query.py", line 150, in __init__

    **kwargs)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/database/database.py", line 579, in __init__

    super(ZTBioDatabase, self).__init__(name, **kwargs)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/database/database.py", line 93, in __init__

    original_extension=original_extension)

TypeError: object.__init__() takes no parameters

[Amir Mohammadi]

Hi your versions seem to be incompatible.

Could you please update your bob packages?

conda remove bob  # the bob package will stop you from upgrading core packages.

conda update --all

This is Pavel's fault. He only released one core package "bob.db.base" and then released bob.bio.base and bob.bio.spear which depended on that package. He should have released a new version of bob instead.

We have measures to prevent people from doing this but he even silently disabled some tests: https://gitlab.idiap.ch/bob/bob.bio.spear/issues/26 to make his release happen.

Now, people will install the bob package  which pins down bob.db.base to an old version but will install the latest bob.bio.base and bob.bio.spear which are incompatible with an old version of bob.db.base.

I expect every new installation will be broken until we have a new release of Bob.

For the time being you can use the commands above for a workaround.

Best,
Amir

[André Anjos]

Hello,

We have one issue/MR holding back release 2.7.x of Bob:

https://gitlab.idiap.ch/bob/bob.learn.libsvm/merge_requests/3

Once that is fixed we can proceed with the release. Patches are accepted at this point

Best, A

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Dr. André Anjos
Idiap Research Institute
Centre du Parc - rue Marconi 19
CH-1920 Martigny, Suisse
Phone: +41 27 721 7763
Fax: +41 27 721 7712
http://andreanjos.org

[Jinfang Wang]

Hi, Amir,

Your advice is the right solution, but a new issue comes. I have retrieved the similar problems and answers here and found some files might be missing. If my guess is right, could you give me some advice on the contents and format of the related files?

Thanks,

Jinfang

------------------------------------------------------------------------------------------

(bob_py27) root@hunfoo:/home/jfw# verify.py -d voxforge -p energy-2gauss -e mfcc-60 -a gmm-voxforge -s ubm_gmm --groups {dev,eval}

bob.bio.base@2017-06-01 17:22:30,618 -- ERROR: During the execution, an exception was raised: [Errno 2] No such file or directory: '[YOUR_VOXFORGE_DIRECTORY]/ColinBeckingham-20091029-hfv/wav/a0001.wav'

Traceback (most recent call last):

  File "/usr/local/anaconda2/envs/bob_py27/bin/verify.py", line 6, in <module> sys.exit(bob.bio.base.script.verify.main())

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/verify.py", line 454, in main verify(args, command_line_parameters)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/verify.py", line 434, in verify if not execute(args):

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/verify.py", line 264, in execute force = args.force)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/tools/preprocessor.py", line 71, in preprocess

    data = preprocessor.read_original_data(file_object, original_directory, original_extension)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/utils/io.py", line 79, in read_original_data return biofile.load(directory, extension)

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/spear/database/database.py", line 20, in load

    rate, audio = scipy.io.wavfile.read(self.make_path(directory, extension))

  File "/usr/local/anaconda2/envs/bob_py27/lib/python2.7/site-packages/scipy/io/wavfile.py", line 233, in read fid = open(filename, 'rb')

IOError: [Errno 2] No such file or directory: '[YOUR_VOXFORGE_DIRECTORY]/ColinBeckingham-20091029-hfv/wav/a0001.wav'

[Amir Mohammadi]

Hi please read the docs, here

http://pythonhosted.org/bob.bio.base/installation.html#databases

Thanks,
Amir

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[Jinfang Wang]

Hi, Amir and Manuel,

During Spyder debugging, the two errors always come. Could you tell me which IDE you are using for Bob? Which version? And the downloaded address?

Thank you.

-----------------------------------------------------

bob.bio.base@2017-06-02 16:50:09,917 -- ERROR: Could not write the experimental setup into file 'results/ubm_gmm/None/Experiment.info'

bob.bio.base@2017-06-02 16:44:59,744 -- ERROR: During the execution, an exception was raised: Invalid group '{dev,eval}'. Valid values are ['dev', 'eval', 'world', 'optional_world_1', 'optional_world_2'], or lists/tuples of those

[André Anjos]

On Fri, Jun 2, 2017 at 11:08 AM, Jinfang Wang <wangj...@gmail.com> wrote:

During Spyder debugging, the two errors always come. Could you tell me which IDE you are using for Bob? Which version? And the downloaded address?

I'm using vim - it works very well: http://www.vim.org
I've been also told that neovim is doing a decent job: https://neovim.io

Best, André

[Manuel Günther]

I am not using any IDE. For me, a normal text editor (gedit for example) and the command line is sufficient. I don't get code auto-completion in my editor, though.

@andre: proposing vi to some-one who is using Spyder is IMHO a bit strange. But I don't want to go into that political discussion once again ;-)

Manuel

[Jinfang Wang]

Hi, Amir,

I am reinstalling anaconda2 and is more familiar with python 2.7 than python 3. Could you tell me how to change the related commands of the new version Bob in the following updated "Installation Instructions" (https://pythonhosted.org/bob/install.html)? 

---------------------------------------------

$ conda update -n root conda

$ conda config --set show_channel_urls True

$ conda config --add channels defaults

$ conda config --add channels https://www.idiap.ch/software/bob/conda

$ conda create -n bob_py3 --override-channels \

  -c https://www.idiap.ch/software/bob/conda \

  -c defaults \

  python=3 bob

$ source activate bob_py3

$ python -c 'import bob.io.base'

---------------------------------------------

I hope to continue to install and use Bob with python 2.7. Also 4 packages, bob.learn.em, bob.bio.gmm, bob.bio. spear, bob.bio.base.

Thank you.

[Amir Mohammadi]

Hi,

Replace python=3 with python=2

Best,
Amir

--

[Jinfang Wang]

Thank André and Manuel.

Both your advice is very important for a newcomer of python. In fact, I can't express my wondering exactly. I prefer an IDE (It's not important by itself) equipped with good debugging capabilities. You must know that we are accustomed to manipulating matlab for a long time, especially its debugger.

[Jinfang Wang]

Hi, Amir,

This the 2nd installation and testing for Bob. Is the installation working again?

Thank you.

----------------------------------------------------------------------------------------------------------------

(bob_py27) jfw@hunfoo:~$ nosetests -sv bob.bio

bob.bio.base@2017-06-04 16:59:26,961 -- WARNING: Downloading the AT&T database from 'http://www.cl.cam.ac.uk/Research/DTG/attarchive/pub/data/att_faces.zip' to '/tmp/atnt_db_tYvgMN' ...

bob.bio.base@2017-06-04 16:59:26,962 -- WARNING: To avoid this, please download the database manually, extract the data and set the ATNT_DATABASE_DIRECTORY environment variable to this directory.

bob.bio.base.test.test_algorithms.test_pca ... bob.bio.base@2017-06-04 16:59:46,564 -- INFO:   -> Training LinearMachine using PCA

bob.bio.base@2017-06-04 16:59:47,090 -- INFO:     ... Keeping 5 PCA dimensions

bob.bio.base@2017-06-04 16:59:47,157 -- INFO:   -> Training LinearMachine using PCA

bob.bio.base@2017-06-04 16:59:47,201 -- INFO:     ... Keeping 140 PCA dimensions

ok

bob.bio.base.test.test_algorithms.test_lda ... bob.bio.base@2017-06-04 16:59:47,249 -- INFO:   -> Training Linear Machine using PCA

bob.bio.base@2017-06-04 16:59:47,306 -- INFO:   ... Limiting PCA subspace to 10 dimensions

bob.bio.base@2017-06-04 16:59:47,307 -- INFO:   -> Projecting training data to PCA subspace

bob.bio.base@2017-06-04 16:59:47,309 -- INFO:   -> Training Linear Machine using LDA

bob.bio.base@2017-06-04 16:59:47,355 -- INFO:   -> Training Linear Machine using PCA

bob.bio.base@2017-06-04 16:59:47,406 -- INFO:   ... Limiting PCA subspace to 132 dimensions

bob.bio.base@2017-06-04 16:59:47,413 -- INFO:   -> Projecting training data to PCA subspace

bob.bio.base@2017-06-04 16:59:47,453 -- INFO:   -> Training Linear Machine using LDA

ok

bob.bio.base.test.test_algorithms.test_distance ... ok

bob.bio.base.test.test_algorithms.test_bic ... bob.bio.base@2017-06-04 16:59:47,524 -- INFO:   -> Computing pairs

bob.bio.base@2017-06-04 16:59:47,527 -- INFO:   -> Limiting intrapersonal pairs from 450 to 100

bob.bio.base@2017-06-04 16:59:47,529 -- INFO:   -> Limiting extrapersonal pairs from 4500 to 100

bob.bio.base@2017-06-04 16:59:47,529 -- INFO:   -> Computing 100 intrapersonal results

bob.bio.base@2017-06-04 16:59:47,533 -- INFO:   -> Computing 100 extrapersonal results

bob.bio.base@2017-06-04 16:59:47,534 -- INFO:   -> Training BIC machine

bob.bio.base@2017-06-04 16:59:47,561 -- INFO:   -> Computing pairs

bob.bio.base@2017-06-04 16:59:47,562 -- INFO:   -> Limiting intrapersonal pairs from 450 to 100

bob.bio.base@2017-06-04 16:59:47,565 -- INFO:   -> Limiting extrapersonal pairs from 4500 to 100

bob.bio.base@2017-06-04 16:59:47,566 -- INFO:   -> Computing 100 intrapersonal results

bob.bio.base@2017-06-04 16:59:47,566 -- INFO:   -> Computing 100 extrapersonal results

bob.bio.base@2017-06-04 16:59:47,567 -- INFO:   -> Training BIC machine

ok

bob.bio.base.test.test_algorithms.test_plda ... bob.bio.base@2017-06-04 16:59:47,604 -- INFO:   -> Training LinearMachine using PCA 

bob.bio.base@2017-06-04 16:59:47,653 -- INFO:   -> limiting PCA subspace to 10 dimensions

bob.bio.base@2017-06-04 16:59:47,655 -- INFO:   -> Training PLDA base machine

bob.learn.em@2017-06-04 16:59:47,665 -- INFO: Iteration = 0/1

ok

bob.bio.base.test.test_algorithms.test_plda_nopca ... bob.bio.base@2017-06-04 16:59:47,712 -- INFO:   -> Training PLDA base machine

bob.learn.em@2017-06-04 16:59:47,763 -- INFO: Iteration = 0/1

ok

bob.bio.base.test.test_config_file.test_basic ... ok

bob.bio.base.test.test_config_file.test_compare_to_cmdline_basic ... ok

bob.bio.base.test.test_config_file.test_compare_to_cmdline_resources ... ok

bob.bio.base.test.test_config_file.test_compare_to_cmdline_skip ... ok

bob.bio.base.test.test_config_file.test_from_resource ... ok

bob.bio.base.test.test_config_file.test_from_module ... ok

bob.bio.base.test.test_config_file.test_order ... ok

bob.bio.base.test.test_config_file.test_order_inverse ... ok

bob.bio.base.test.test_extractor.test_linearize ... ok

bob.bio.base.test.test_filelist.test_query ... ok

bob.bio.base.test.test_filelist.test_query_protocol ... ok

bob.bio.base.test.test_filelist.test_query_dense ... ok

bob.bio.base.test.test_filelist.test_annotation ... ok

bob.bio.base.test.test_filelist.test_multiple_extensions ... ok

bob.bio.base.test.test_filelist.test_driver_api ... ok

bob.bio.base.test.test_preprocessor.test_filename ... ok

bob.bio.base.test.test_scripts.test_grid_search ... ok

bob.bio.base.test.test_scripts.test_verify_parallel ... ok

bob.bio.base.test.test_scripts.test_verify_config ... ok

bob.bio.base.test.test_scripts.test_verify_algorithm_noprojection ... ok

bob.bio.base.test.test_scripts.test_verify_resources ... ok

bob.bio.base.test.test_scripts.test_verify_commandline ... ok

bob.bio.base.test.test_scripts.test_verify_compressed ... ok

bob.bio.base.test.test_scripts.test_verify_calibrate ... ok

bob.bio.base.test.test_scripts.test_verify_fileset ... ok

bob.bio.base.test.test_scripts.test_verify_filelist ... ok

bob.bio.base.test.test_scripts.test_verify_missing ... bob.bio.base@2017-06-04 17:00:47,419 -- ERROR: There are NaN scores inside one of the score files for group dev; ZT-Norm will not work

ok

bob.bio.base.test.test_scripts.test_verify_execute_only ... Would have executed task 'preprocess' with no parameters

Would have executed task 'compute-scores' with group='dev' and score-type='A' 

Would have executed task 'compute-scores' with group='dev' and score-type='B' 

Would have executed task 'compute-scores' with group='dev' and score-type='C' 

Would have executed task 'compute-scores' with group='dev' and score-type='D' 

Would have executed task 'compute-scores' with group='dev' and score-type='Z' 

ok

bob.bio.base.test.test_scripts.test_internal_raises ... bob.bio.base@2017-06-04 17:00:47,628 -- ERROR: During the execution, an exception was raised: The option --group is an internal option and cannot be used to define experiments; did you mean to use --groups?

bob.bio.base@2017-06-04 17:00:47,664 -- ERROR: During the execution, an exception was raised: The option --model-type is an internal option and cannot be used to define experiments

bob.bio.base@2017-06-04 17:00:47,710 -- ERROR: During the execution, an exception was raised: The option --score-type is an internal option and cannot be used to define experiments

ok

bob.bio.base.test.test_scripts.test_fusion ... ok

bob.bio.base.test.test_scripts.test_evaluate ... The HTER of the development set of 'no norm' is 50.000%

The HTER of the evaluation set of 'no norm' is 50.000%

The HTER of the development set of 'ZT norm' is 50.000%

The HTER of the evaluation set of 'ZT norm' is 50.000%

sh: latex: 未找到命令

ERROR

bob.bio.base.test.test_scripts.test_resources ... ok

bob.bio.base.test.test_scripts.test_collect_results ... ok

bob.bio.base.test.test_scripts.test_scripts ... ok

bob.bio.base.test.test_tools.test_file_selector ... ok

bob.bio.base.test.test_utils.test_resources ... ok

bob.bio.base.test.test_utils.test_grid ... bob.bio.base@2017-06-04 17:00:49,225 -- WARNING: Under the desired name 'demanding', there are multiple entry points defined, we return the first one: ['bob.bio.base.config.grid.demanding', 'bob.bio.spear.config.grid.demanding']

ok

bob.bio.base.test.test_utils.test_io ... ok

bob.bio.base.test.test_utils.test_sampling ... ok

bob.bio.gmm.test.test_algorithms.test_gmm ... ok

bob.bio.gmm.test.test_algorithms.test_gmm_regular ... ok

bob.bio.gmm.test.test_algorithms.test_isv ... ok

bob.bio.gmm.test.test_algorithms.test_jfa ... ok

bob.bio.gmm.test.test_algorithms.test_ivector_cosine ... ok

bob.bio.gmm.test.test_algorithms.test_ivector_plda ... ok

bob.bio.gmm.test.test_algorithms.test_ivector_lda_wccn_plda ... ok

bob.bio.gmm.test.test_scripts.test_gmm_parallel ... ok

bob.bio.gmm.test.test_scripts.test_isv_parallel ... ok

bob.bio.gmm.test.test_scripts.test_ivector_cosine_parallel ... ok

bob.bio.gmm.test.test_scripts.test_ivector_lda_wccn_plda_parallel ... ok

bob.bio.gmm.test.test_scripts.test_gmm_sequential ... ok

bob.bio.gmm.test.test_scripts.test_isv_sequential ... ok

bob.bio.gmm.test.test_scripts.test_ivector_cosine_sequential ... ok

bob.bio.gmm.test.test_scripts.test_ivector_lda_wccn_plda_sequential ... ok

bob.bio.gmm.test.test_scripts.test_internal_raises ... bob.bio.gmm@2017-06-04 17:04:30,959 -- ERROR: During the execution, an exception was raised: The option --iteration is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-06-04 17:04:30,988 -- ERROR: During the execution, an exception was raised: The option --group is an internal option and cannot be used to define experiments; did you mean to use --groups?

bob.bio.gmm@2017-06-04 17:04:31,023 -- ERROR: During the execution, an exception was raised: The option --model-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-06-04 17:04:31,060 -- ERROR: During the execution, an exception was raised: The option --score-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-06-04 17:04:31,102 -- ERROR: During the execution, an exception was raised: The option --iteration is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-06-04 17:04:31,146 -- ERROR: During the execution, an exception was raised: The option --group is an internal option and cannot be used to define experiments; did you mean to use --groups?

bob.bio.gmm@2017-06-04 17:04:31,188 -- ERROR: During the execution, an exception was raised: The option --model-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-06-04 17:04:31,225 -- ERROR: During the execution, an exception was raised: The option --score-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-06-04 17:04:31,269 -- ERROR: During the execution, an exception was raised: The option --iteration is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-06-04 17:04:31,295 -- ERROR: During the execution, an exception was raised: The option --group is an internal option and cannot be used to define experiments; did you mean to use --groups?

bob.bio.gmm@2017-06-04 17:04:31,342 -- ERROR: During the execution, an exception was raised: The option --model-type is an internal option and cannot be used to define experiments

bob.bio.gmm@2017-06-04 17:04:31,370 -- ERROR: During the execution, an exception was raised: The option --score-type is an internal option and cannot be used to define experiments

ok

bob.bio.spear.test.test_databases.test_asvspoof_licit ... SKIP: Skipping test since the database bob.db.asvspoof seems not to be available: No module named asvspoof

bob.bio.spear.test.test_databases.test_asvspoof_spoof ... SKIP: Skipping test since the database bob.db.asvspoof seems not to be available: No module named asvspoof

bob.bio.spear.test.test_databases.test_avspoof_licit ... SKIP: Skipping test since the database bob.db.avspoof seems not to be available: No module named avspoof

bob.bio.spear.test.test_databases.test_avspoof_spoof ... SKIP: Skipping test since the database bob.db.avspoof seems not to be available: No module named avspoof

bob.bio.spear.test.test_databases.test_mobio ... SKIP: Skipping test since the database bob.db.mobio seems not to be available: No module named mobio

bob.bio.spear.test.test_databases.test_voicepa_licit ... SKIP: Skipping test since the database bob.db.voicepa seems not to be available: No module named voicepa

bob.bio.spear.test.test_databases.test_voicepa_spoof ... SKIP: Skipping test since the database bob.db.voicepa seems not to be available: No module named voicepa

bob.bio.spear.test.test_databases.test_timit ... ok

bob.bio.spear.test.test_extractors.test_mfcc ... bob.bio.spear@2017-06-04 17:04:32,104 -- INFO: After 2 Gaussian Energy-based VAD there are 370 frames remaining over 485

ok

bob.bio.spear.test.test_extractors.test_lfcc ... bob.bio.spear@2017-06-04 17:04:32,381 -- INFO: After 2 Gaussian Energy-based VAD there are 370 frames remaining over 485

ok

bob.bio.spear.test.test_preprocessors.test_energy_2gauss ... bob.bio.spear@2017-06-04 17:04:32,679 -- INFO: After 2 Gaussian Energy-based VAD there are 370 frames remaining over 485

ok

bob.bio.spear.test.test_preprocessors.test_energy_thr ... bob.bio.spear@2017-06-04 17:04:32,717 -- INFO: After thresholded Energy-based VAD there are 165 frames remaining over 485

ok

bob.bio.spear.test.test_preprocessors.test_mod_4hz ... bob.bio.spear@2017-06-04 17:04:32,794 -- INFO: After Mod-4Hz based VAD there are 263 frames remaining over 485

ok

======================================================================

ERROR: bob.bio.base.test.test_scripts.test_evaluate

----------------------------------------------------------------------

Traceback (most recent call last):

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/nose/case.py", line 197, in runTest

    self.test(*self.arg)

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/test/test_scripts.py", line 400, in test_evaluate

    main(parameters)

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/evaluate.py", line 282, in main

    raise RuntimeError("During plotting of ROC curves, the following exception occured:\n%s\nUsually this happens when the label contains characters that LaTeX cannot parse." % e)

RuntimeError: During plotting of ROC curves, the following exception occured:

LaTeX was not able to process the following string:

'lp'

Here is the full report generated by LaTeX: 

Usually this happens when the label contains characters that LaTeX cannot parse.

----------------------------------------------------------------------

Ran 74 tests in 286.313s

FAILED (SKIP=7, errors=1)

[Jinfang Wang]

Hi,

When running databases.py, no Voxforge is registered. When running "verify.py -d voxforge -p energy-2gauss -e mfcc-60 -a gmm-voxforge -s ubm_gmm --groups {dev,eval}", the error happens. I guess the variable, [YOUR_VOXFORGE_DIRECTORY], might be not right. Could you give me some solutions?

Thank you.

Jinfang

------------------------------------------------------------------------------------------

(bob_py27) jfw@hunfoo:~$ cat .bob_bio_databases.txt

[YOUR_VOXFORGE_DIRECTORY] = /media/sf_winshare/Voxforge_bob_bio_spear

(bob_py27) jfw@hunfoo:~$ databases.py

timit:

Original data: [YOUR_TIMIT_WAV_DIRECTORY]

(bob_py27) jfw@hunfoo:~$ verify.py -d voxforge -p energy-2gauss -e mfcc-60 -a gmm-voxforge -s ubm_gmm --groups {dev,eval}

bob.bio.base@2017-06-05 10:59:45,054 -- ERROR: During the execution, an exception was raised: The given command line option 'voxforge' is neither a resource for a 'database', nor an existing configuration file, nor could be interpreted as a command (error: name 'voxforge' is not defined)

Traceback (most recent call last):

  File "/home/jfw/anaconda2/envs/bob_py27/bin/verify.py", line 6, in <module>

    sys.exit(bob.bio.base.script.verify.main())

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/verify.py", line 451, in main

    args = parse_arguments(command_line_parameters)

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/script/verify.py", line 34, in parse_arguments

    skips = ['preprocessing', 'extractor-training', 'extraction', 'projector-training', 'projection', 'enroller-training', 'enrollment', 'score-computation', 'concatenation', 'calibration'])

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/tools/command_line.py", line 422, in initialize

    args = parse_config_file(parsers, args, args_dictionary, keywords, skips)

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/tools/command_line.py", line 291, in parse_config_file

    parser.get_default(keyword))

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/tools/command_line.py", line 239, in take_from_config_or_command_line

    preferred_package=args.preferred_package))

  File "/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/utils/resources.py", line 219, in load_resource

    raise ImportError("The given command line option '%s' is neither a resource for a '%s', nor an existing configuration file, nor could be interpreted as a command (error: %s)"%(resource, keyword, str(e)))

ImportError: The given command line option 'voxforge' is neither a resource for a 'database', nor an existing configuration file, nor could be interpreted as a command (error: name 'voxforge' is not defined)

[Manuel Günther]

This looks like the voxforge database is not registered under the name "voxforge". Could you please run 

resources.py --types database

to see, which databases are registered as resources?

Manuel

[Jinfang Wang]

Hi, Manuel，

How to solve the issue? I can't find the related commands.

Thank you.

------------------------------------------------

(bob_py27) jfw@hunfoo:~$ resources.py --types database

List of registered databases:

- bob.bio.spear 3.1.0 @ /home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages: 

  + asvspoof-licit     --> bob.bio.spear.config.database.asvspoof: database_licit

  + asvspoof-spoof     --> bob.bio.spear.config.database.asvspoof: database_spoof

  + asvspoof2017-licit --> bob.bio.spear.config.database.asvspoof2017: database_licit

  + asvspoof2017-spoof --> bob.bio.spear.config.database.asvspoof2017: database_spoof

  + avspoof-licit      --> bob.bio.spear.config.database.avspoof: database_licit

  + avspoof-spoof      --> bob.bio.spear.config.database.avspoof: database_spoof

  + mobio-audio-female --> bob.bio.spear.config.database.mobio_audio_female: database

  + mobio-audio-male   --> bob.bio.spear.config.database.mobio_audio_male: database

  + timit              --> bob.bio.spear.config.database.timit: database

  + voicepa-licit      --> bob.bio.spear.config.database.voicepa: database_licit

  + voicepa-spoof      --> bob.bio.spear.config.database.voicepa: database_spoof

[Manuel Günther]

Indeed, the voxforge dataset has been removed, with this commit: https://gitlab.idiap.ch/bob/bob.bio.spear/commit/1124460ac441ed4d4b6a252533ef9f78b03e92b8 by Amir.

@Amir, could you please have a look at this? Why was the voxforge dataset removed?

Manuel

[Amir Mohammadi]

You just need to install bob.db.voxforge if you want to use it.

conda install bob.db.voxforge

Best,

Amir

--

[Jinfang Wang]

Hi,

In the "speech" databases commonly used for recognition or verification experiments in IDIAP, which databases are suitable for evaluating the performance of the channel compensation techniques to the greatest extent? For example, Voxforge or any others? Hope that the databases are free. I know that the databases of NIST SRE 2012 are more expensive.

Thank you.

Jinfang

[Pavel Korshunov]

Hi,

We do not have that many databases for speaker verification. Voxforge is not a serious database that should be used in research. It is more for demonstration of bob.bio.spear capabilities. 

You can look into MOBIO database (audio part): https://www.idiap.ch/dataset/mobio

And you can look into AVspoof database as well: https://www.idiap.ch/dataset/avspoof 

Although it was created for presentation attack detection, part of it (genuine samples) can be used in verification experiments.

You can always create Bob's database interface for any other database you like. It is especially easy to do by using filelists (as an example, see bob.db.voxforge package and here: http://pythonhosted.org/bob.bio.base/filelist-guide.html for the formats of the filelists). But in a nutshell, you can create a new database from the existing file lists in the required format following this example:

import bob.bio.base

from bob.bio.spear.database import AudioBioFile

class MyBeautyDB(bob.bio.base.database.FileListBioDatabase):

  """Wrapper class for MyBeautyDB speaker database.

  """

  def __init__(self, original_directory="[MyBeautyDB_DATA_DIRECTORY]", original_extension=".wav"):

    # call base class constructor

    from pkg_resources import resource_filename

    folder = resource_filename(__name__, '../folder_filelists')

    super(MyBeautyDB, self).__init__(folder, 'db_name', bio_file_class=AudioBioFile,

                                   original_directory=original_directory,

                                   original_extension=original_extension)

database = MyBeautyDB()

Now, you can use 'database' object inside your configuration scripts that you can pass to verify.py or train.py (or train_gmm.py, train_isv.py, etc) of bob.bio.spear.

Best,

Pavel

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[Jinfang Wang]

Hi,

1.When computing the value HTER of the evaluation set, is it required that the optional arguments, "--dev-files DEV_FILES" must be given? Could you explain why?

------------------------------------------------------

(bob_py27) jfw@hunfoo:~/analyseBob/command1/results/ubm_gmm/None/nonorm$ evaluate.py --eval-files /home/jfw/analyseBob/command1/results/ubm_gmm/None/nonorm/scores-eval --legends voxforge --criterion HTER -vv

usage: evaluate.py [-h] -d DEV_FILES [DEV_FILES ...]

                   [-e EVAL_FILES [EVAL_FILES ...]] [-s DIRECTORY]

                   [-c {EER,HTER,FAR}] [-f FAR_VALUE] [-x] [-m] [--cost COST]

                   [-r] [-t THRESHOLDS [THRESHOLDS ...]]

                   [-l LEGENDS [LEGENDS ...]] [-F LEGEND_FONT_SIZE]

                   [-P LEGEND_POSITION] [-T TITLE [TITLE ...]] [-R ROC]

                   [-D DET] [-C CMC] [-E EPC] [--parser {4column,5column}]

                   [-v]

evaluate.py: error: argument -d/--dev-files is required

------------------------------------------------------

2.Are two command lines about "evaluate.py" correct expressions? I suspect their correct.

1) EER for the development set

evaluate.py --dev-files scores-dev --directory /home/jfw/analyseBob/command1/results/ubm_gmm/None/nonorm --legends voxforge --criterion EER -vv

--------------------------------

bob.bio.base@2017-06-08 15:57:55,655 -- INFO: Loading 1 score files of the development set

bob.bio.base@2017-06-08 15:57:55,659 -- INFO: Computing EER on the development set

The EER of the development set of 'voxforge' is 1.981%

2) HTER for the evaluation set

evaluate.py --dev-files scores-dev --eval-files scores-eval --directory /home/jfw/analyseBob/command1/results/ubm_gmm/None/nonorm --legends voxforge --criterion HTER -vv

--------------------------------

bob.bio.base@2017-06-08 15:50:06,716 -- INFO: Loading 1 score files of the development set

bob.bio.base@2017-06-08 15:50:06,720 -- INFO: Loading 1 score files of the evaluation set

bob.bio.base@2017-06-08 15:50:06,724 -- INFO: Computing HTER on the development and HTER on the evaluation set

The HTER of the development set of 'voxforge' is 1.593%

The HTER of the evaluation set of 'voxforge' is 5.519%

Thank you.

Jinfang

[Manuel Günther]

1. The development set files are required to compute the threshold, for which the HTER on the evaluation set is computed.

2. The two commands are not identical. The difference is the --criterion. The --criterion defines, which kind of criterion should be used to compute the threshold on the development set (see 1.). On the evaluation set, the HTER is computed, throughout.

Hope this helps

Manuel

[Jinfang Wang]

Hi,

In the function "parse_config_file()" of "~/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/tools/command_line.py", although I can know that "utils" is from module 'bob.bio.base.utils', I can't find the help documentation about the usage of "utils.read_config_file()". Could you tell me where to find it?

-----------------------------------------------------

(Pdb) utils

<module 'bob.bio.base.utils' from '/home/jfw/anaconda2/envs/bob_py27/lib/python2.7/site-packages/bob/bio/base/utils/__init__.pyc'>

Thank you.

Jinfang