Hi Jarrett,
The bulk_extractor tool will currently detect and try to carve encrypted RAR files, but that's the extent of encrypted file identification. You can find detailed information on scanner capabilities in the BE user manual at
http://digitalcorpora.org/downloads/bulk_extractor/BEUsersManual.pdf. Note that bulk_extractor will *also* identify AES keys contained within disk images, which can potentially help you decrypt certain materials.
Regarding the "other native tool" question. As far as I'm aware, there are not any general-purpose "find all encrypted files" tools (and there are not currently any *specifically focused* tools in BitCurator).
Identifying encrypted materials in the general case is actually quite a difficult problem. Imagine you were looking for, say, File Vault 1 or File Vault 2 encrypted user directories on an HFS+ volume. Or just whether there were any encrypted PDFs in a file system. Or trying to identify disk contents encrypted with BitLocker. Or hunting for TrueCrypt volumes present on a disk. Or identifying files encrypted with GnuPG or using the built-in encryption facility in 7-zip.
These various types of encryption use different algorithms, have different associated artifacts that may also reside in a given file system, may or may not be subject to forms of exploitation depending on the version and specific application of the tool, and so on.