​Ten simple rules for forming a scientific professional society AND more Re: PLOS Computational Biology Volume 13(3) March 2017

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On Tue, Apr 4, 2017 at 12:49 AM, PLOS Computational Biology <ale...@e.plos.org> wrote:

ADVERTISEMENT Manage Preferences > New Articles in PLOS Computational Biology PUBLISHED: March 01, 2017 to March 31, 2017 Editorials PLOS Computational Biology 2016 Reviewer and Editorial Board Thank You ​​ Ten simple rules for forming a scientific professional society Bruno A. Gaëta, Javier De Las Rivas, Paul Horton, Pieter Meysman, Nicola Mulder, Paolo Romano, Lonnie Welch Ten simple rules for short and swift presentations Christopher J. Lortie Ten simple rules for responsible big data research Matthew Zook, Solon Barocas, danah boyd, Kate Crawford, Emily Keller, Seeta Peña Gangadharan, Alyssa Goodman, Rachelle Hollander, Barbara A. Koenig, Jacob Metcalf, Arvind Narayanan, Alondra Nelson, Frank Pasquale Research Articles Multiregional integration in the brain during resting-state fMRI activity Etay Hay, Petra Ritter, Nancy J. Lobaugh, Anthony R. McIntosh A magnesium-induced triplex pre-organizes the SAM-II riboswitch Susmita Roy, Heiko Lammert, Ryan L. Hayes, Bin Chen, Regan LeBlanc, T. Kwaku Dayie, José N. Onuchic, Karissa Y. Sanbonmatsu Fidelity of the representation of value in decision-making Paul M. Bays, Ben A. Dowding Novel non-invasive algorithm to identify the origins of re-entry and ectopic foci in the atria from 64-lead ECGs: A computational study Erick A. Perez Alday, Michael A. Colman, Philip Langley, Henggui Zhang Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion Carlos Pulido-Quetglas, Estel Aparicio-Prat, Carme Arnan, Taisia Polidori, Toni Hermoso, Emilio Palumbo, Julia Ponomarenko, Roderic Guigo, Rory Johnson Mechanisms of fast and stringent search in homologous pairing of double-stranded DNA Amir Bitran, Wei-Yin Chiang, Erel Levine, Mara Prentiss Managing uncertainty in metabolic network structure and improving predictions using EnsembleFBA Matthew B. Biggs, Jason A. Papin Biomarkers are used to predict quantitative metabolite concentration profiles in human red blood cells James T. Yurkovich, Laurence Yang, Bernhard O. Palsson Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study Emma Saulnier, Olivier Gascuel, Samuel Alizon Feedback between motion and sensation provides nonlinear boost in run-and-tumble navigation Junjiajia Long, Steven W. Zucker, Thierry Emonet Bistable front dynamics in a contractile medium: Travelling wave fronts and cortical advection define stable zones of RhoA signaling at epithelial adherens junctions Rashmi Priya, Guillermo A. Gomez, Srikanth Budnar, Bipul R. Acharya, Andras Czirok, Alpha S. Yap, Zoltan Neufeld BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods Krzysztof J. Gorgolewski, Fidel Alfaro-Almagro, Tibor Auer, Pierre Bellec, Mihai Capotă, M. Mallar Chakravarty, Nathan W. Churchill, Alexander Li Cohen, R. Cameron Craddock, Gabriel A. Devenyi, Anders Eklund, Oscar Esteban, Guillaume Flandin, Satrajit S. Ghosh, J. Swaroop Guntupalli, Mark Jenkinson, Anisha Keshavan, Gregory Kiar, Franziskus Liem, Pradeep Reddy Raamana, David Raffelt, Christopher J. Steele, Pierre-Olivier Quirion, Robert E. Smith, Stephen C. Strother, Gaël Varoquaux, Yida Wang, Tal Yarkoni, Russell A. Poldrack A model for brain life history evolution Mauricio González-Forero, Timm Faulwasser, Laurent Lehmann A human judgment approach to epidemiological forecasting David C. Farrow, Logan C. Brooks, Sangwon Hyun, Ryan J. Tibshirani, Donald S. Burke, Roni Rosenfeld Modelling T cell proliferation: Dynamics heterogeneity depending on cell differentiation, age, and genetic background Julien Vibert, Véronique Thomas-Vaslin Patient-specific modeling of individual sickle cell behavior under transient hypoxia Xuejin Li, E. Du, Ming Dao, Subra Suresh, George Em Karniadakis Stimulus-specific adaptation in a recurrent network model of primary auditory cortex Tohar S. Yarden, Israel Nelken Dynamics robustness of cascading systems Jonathan T. Young, Tetsuhiro S. Hatakeyama, Kunihiko Kaneko Parameter estimation for multistage clonal expansion models from cancer incidence data: A practical identifiability analysis Andrew F. Brouwer, Rafael Meza, Marisa C. Eisenberg Fast online deconvolution of calcium imaging data Johannes Friedrich, Pengcheng Zhou, Liam Paninski A thermodynamically consistent model of the post-translational Kai circadian clock Joris Paijmans, David K. Lubensky, Pieter Rein ten Wolde Classification and adaptive behavior prediction of children with autism spectrum disorder based upon multivariate data analysis of markers of oxidative stress and DNA methylation Daniel P. Howsmon, Uwe Kruger, Stepan Melnyk, S. Jill James, Juergen Hahn Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability Cibele V. Falkenberg, Evren U. Azeloglu, Mark Stothers, Thomas J. Deerinck, Yibang Chen, John C. He, Mark H. Ellisman, James C. Hone, Ravi Iyengar, Leslie M. Loew Reconstruction and signal propagation analysis of the Syk signaling network in breast cancer cells Aurélien Naldi, Romain M. Larive, Urszula Czerwinska, Serge Urbach, Philippe Montcourrier, Christian Roy, Jérôme Solassol, Gilles Freiss, Peter J. Coopman, Ovidiu Radulescu A general model for metabolic scaling in self-similar asymmetric networks Alexander Byers Brummer, Van M. Savage, Brian J. Enquist A computational analysis of in vivo VEGFR activation by multiple co-expressed ligands Lindsay E. Clegg, Feilim Mac Gabhann Navigating in foldonia: Using accelerated molecular dynamics to explore stability, unfolding and self-healing of the β-solenoid structure formed by a silk-like polypeptide Binwu Zhao, Martien A. Cohen Stuart, Carol K. Hall Structurally detailed coarse-grained model for Sec-facilitated co-translational protein translocation and membrane integration Michiel J. M. Niesen, Connie Y. Wang, Reid C. Van Lehn, Thomas F. Miller III Bioenergetics-based modeling of Plasmodium falciparum metabolism reveals its essential genes, nutritional requirements, and thermodynamic bottlenecks Anush Chiappino-Pepe, Stepan Tymoshenko, Meriç Ataman, Dominique Soldati-Favre, Vassily Hatzimanikatis Network perturbation by recurrent regulatory variants in cancer Kiwon Jang, Kwoneel Kim, Ara Cho, Insuk Lee, Jung Kyoon Choi PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction Zhu-Hong You, Zhi-An Huang, Zexuan Zhu, Gui-Ying Yan, Zheng-Wei Li, Zhenkun Wen, Xing Chen Geometry can provide long-range mechanical guidance for embryogenesis Mahamar Dicko, Pierre Saramito, Guy B. Blanchard, Claire M. Lye, Bénédicte Sanson, Jocelyn Étienne Systematic identification of phosphorylation-mediated protein interaction switches Matthew J. Betts, Oliver Wichmann, Mathias Utz, Timon Andre, Evangelia Petsalaki, Pablo Minguez, Luca Parca, Frederick P. Roth, Anne-Claude Gavin, Peer Bork, Robert B. Russell Phylodynamics on local sexual contact networks David A. Rasmussen, Roger Kouyos, Huldrych F. Günthard, Tanja Stadler High GC content causes orphan proteins to be intrinsically disordered Walter Basile, Oxana Sachenkova, Sara Light, Arne Elofsson A critical analysis of computational protein design with sparse residue interaction graphs Swati Jain, Jonathan D. Jou, Ivelin S. Georgiev, Bruce R. Donald Dysfunctions of the basal ganglia-cerebellar-thalamo-cortical system produce motor tics in Tourette syndrome Daniele Caligiore, Francesco Mannella, Michael A. Arbib, Gianluca Baldassarre Migration of small ligands in globins: Xe diffusion in truncated hemoglobin N Polydefkis Diamantis, Oliver T. Unke, Markus Meuwly Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider, Guillaume Beslon Learning about and from others' prudence, impatience or laziness: The computational bases of attitude alignment Marie Devaine, Jean Daunizeau Interrogating the topological robustness of gene regulatory circuits by randomization Bin Huang, Mingyang Lu, Dongya Jia, Eshel Ben-Jacob, Herbert Levine, Jose N. Onuchic ARACHNE: A neural-neuroglial network builder with remotely controlled parallel computing Sergey G. Aleksin, Kaiyu Zheng, Dmitri A. Rusakov, Leonid P. Savtchenko The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes Jeffrey Chen, Thomas MacCarthy Effects of contact structure on the transient evolution of HIV virulence Sang Woo Park, Benjamin M. Bolker Corrections Correction: Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data The PLOS Computational Biology Staff Correction: A Molecular Clock Infers Heterogeneous Tissue Age Among Patients with Barrett's Esophagus The PLOS Computational Biology Staff ADVERTISEMENT ​    SUBMIT YOUR RESEARCH     ​  ​  Public Library of Science 1160 Battery St. Suite 100 San Francisco, CA 94111, US

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