Re: Discrete phylogeography error

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chandith1

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Feb 9, 2015, 3:30:24 AM2/9/15
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Hi all
I am trying to run discrete phylogeography in BEAST 2.1.3 and got the following error message repeatedly. can someone help me to figure out the problem with my xml file?

P(posterior) = -Infinity (was NaN)
    P(prior) = -Infinity (was NaN)
        P(BayesianSkyline.t:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = -427.8655320485967 (was NaN)
        P(MarkovChainedPopSizes.t:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = -33.700856263602155 (was NaN)
        P(ClockPrior.c:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = 0.0 (was NaN)
        P(GammaShapePrior.s:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = -1.0 (was NaN)
        P(MutationRatePrior.s:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = 0.0 (was NaN)
        P(nonZeroRatePrior.s:location) = -Infinity (was NaN)
        P(RateACPrior.s:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = -3.184008455701433 (was NaN)
        P(RateAGPrior.s:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = -3.1686658147294304 (was NaN)
        P(RateATPrior.s:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = -3.184008455701433 (was NaN)
        P(RateCGPrior.s:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = -3.184008455701433 (was NaN)
        P(RateCTPrior.s:Cesian evolutionary analysis. PLOS Computational Biology 10(4): e1003537, 2014


======================================================
HIKV_GB_14022014_fullgenome_ECSA_reduced) = -3.1686658147294304 (was NaN)
        P(RateGTPrior.s:CHIKV_GB_14022014_fullgenome_ECSA_reduced) = -3.184008455701433 (was NaN)
        P(relativeGeoRatesPrior.s:location) = -209.99999999999997 (was NaN)
        P(geoclockPrior.c:location) = -6.915086640662835 (was NaN)
    P(likelihood) = NaN (was NaN)
        P(treeLikelihood.CHIKV_GB_14022014_fullgenome_ECSA_reduced) = NaN (was NaN)
        P(traitedtreeLikelihood.location) = NaN (was NaN)
    P(fossilCalibrations) = 0.0 (was NaN)
java.lang.Exception: Could not find a proper state to initialise. Perhaps try another seed.
    at beast.core.MCMC.run(Unknown Source)
    at beast.app.BeastMCMC.run(Unknown Source)
    at beast.app.beastapp.BeastMain.<init>(Unknown Source)
    at beast.app.beastapp.BeastMain.main(Unknown Source)

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